Strain Fitness in Pseudomonas putida KT2440 around PP_2709

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
3,098,240	+		PP_2707	0.76	+1.4
3,098,240	+				-0.3
3,098,241	-		PP_2707	0.76	+0.8
3,098,241	-		PP_2707	0.76	+1.6
3,098,241	-		PP_2707	0.76	-0.0
3,098,256	-		PP_2707	0.78	+0.0
3,098,330	+		PP_2707	0.87	+0.3
3,098,433	-				-0.6
3,098,516	+				+0.5
3,098,517	-				+1.1
3,098,517	-				-1.2
3,098,535	+				-0.2
3,098,536	-				+0.1
3,098,536	-				-0.2
3,098,536	-				-0.0
3,098,600	-				+0.2
3,098,676	+		PP_2708	0.18	+0.1
3,098,676	+				+3.0
3,098,677	-		PP_2708	0.18	-0.7
3,098,677	-		PP_2708	0.18	-0.2
3,098,677	-		PP_2708	0.18	-0.2
3,098,677	-		PP_2708	0.18	+0.2
3,098,677	-		PP_2708	0.18	-1.1
3,098,720	+		PP_2708	0.25	-0.2
3,098,721	-		PP_2708	0.25	+1.7
3,098,721	-		PP_2708	0.25	-0.6
3,098,721	-		PP_2708	0.25	-2.2
3,098,820	-		PP_2708	0.39	-2.9
3,098,889	+		PP_2708	0.49	-1.8
3,098,890	-		PP_2708	0.50	+2.0
3,098,895	+		PP_2708	0.50	-2.2
3,098,935	-		PP_2708	0.56	-2.1
3,099,105	-		PP_2708	0.81	-1.6
3,099,107	+		PP_2708	0.81	-0.4
3,099,107	+		PP_2708	0.81	-3.6
3,099,126	+		PP_2708	0.84	-1.7
3,099,141	+		PP_2708	0.86	-0.9
3,099,141	+		PP_2708	0.86	-0.1
3,099,141	+		PP_2708	0.86	-1.3
3,099,141	+		PP_2708	0.86	-0.6
3,099,141	+		PP_2708	0.86	-1.0
3,099,141	+		PP_2708	0.86	-0.9
3,099,141	+		PP_2708	0.86	-1.7
3,099,142	-		PP_2708	0.87	+0.0
3,099,142	-		PP_2708	0.87	-0.7
3,099,315	+				+1.1
3,099,422	-		PP_2709	0.14	-2.4
3,099,660	+		PP_2709	0.30	-0.5
3,099,660	+		PP_2709	0.30	+0.8
3,099,660	+		PP_2709	0.30	-1.4
3,099,660	+		PP_2709	0.30	-1.2
3,099,661	-		PP_2709	0.30	-4.1
3,099,661	-		PP_2709	0.30	-1.3
3,099,663	-		PP_2709	0.30	-1.5
3,099,663	-		PP_2709	0.30	-0.5
3,099,663	-		PP_2709	0.30	-0.6
3,099,819	+		PP_2709	0.41	-0.5
3,100,251	+		PP_2709	0.70	-0.5
3,100,300	+		PP_2709	0.73	-0.9
3,100,323	+		PP_2709	0.75	-2.4
3,100,323	+		PP_2709	0.75	-0.9
3,100,324	-		PP_2709	0.75	+0.4
3,100,324	-		PP_2709	0.75	+0.8
3,100,396	+		PP_2709	0.80	-0.8
3,100,396	+		PP_2709	0.80	-0.3
3,100,396	+		PP_2709	0.80	-0.2
3,100,397	-		PP_2709	0.80	-0.9
3,100,525	+		PP_2709	0.89	-0.6
3,100,595	+				-0.6
3,100,595	+				+0.3
3,100,808	+		PP_2710	0.16	-0.0
3,100,808	+		PP_2710	0.16	+1.1
3,100,809	-		PP_2710	0.16	-1.0
3,100,832	+		PP_2710	0.19	-0.8
3,100,833	-		PP_2710	0.20	-0.6
3,100,925	+		PP_2710	0.33	-2.7
3,100,925	+		PP_2710	0.33	-0.3
3,100,926	-		PP_2710	0.33	-1.4
3,100,941	-		PP_2710	0.35	-1.2
3,100,941	-		PP_2710	0.35	-2.4
3,101,045	+		PP_2710	0.51	+0.2
3,101,189	+		PP_2710	0.72	-0.6
3,101,234	+		PP_2710	0.78	-0.3
3,101,235	-		PP_2710	0.79	-0.0
3,101,417	-				+0.1
3,101,417	-				+0.8
3,101,417	-				+0.7
3,101,480	+		PP_2711	0.14	-2.3
3,101,664	+		PP_2711	0.37	-0.6
3,101,665	-		PP_2711	0.37	-0.8
3,101,680	+		PP_2711	0.39	+0.4
3,101,680	+		PP_2711	0.39	+0.6
3,101,680	+		PP_2711	0.39	+0.1
3,101,681	-		PP_2711	0.39	+1.4