Strain Fitness in Pseudomonas putida KT2440 around PP_0365

Experiment: D-Glucose (C) pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0363 and PP_0364 overlap by 8 nucleotidesPP_0364 and PP_0365 overlap by 8 nucleotidesPP_0365 and PP_0366 are separated by 10 nucleotidesPP_0366 and PP_0367 are separated by 173 nucleotides PP_0363: PP_0363 - 8-amino-7-oxononanoate synthase, at 441,120 to 442,292 _0363 PP_0364: PP_0364 - pimeloyl-[acp] methyl ester esterase, at 442,285 to 443,016 _0364 PP_0365: PP_0365 - Malonyl-[acyl-carrier protein] O-methyltransferase, at 443,009 to 443,827 _0365 PP_0366: PP_0366 - dethiobiotin synthetase, at 443,838 to 444,518 _0366 PP_0367: PP_0367 - conserved protein of unknown function, at 444,692 to 445,027 _0367 Position (kb) 443 444Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 442.237 kb on + strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.290 kb on + strandat 442.290 kb on + strandat 442.291 kb on - strandat 442.304 kb on + strandat 442.304 kb on + strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.385 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.660 kb on - strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.678 kb on - strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.788 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.862 kb on + strand, within PP_0364at 442.863 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.957 kb on + strandat 443.097 kb on - strand, within PP_0365at 443.127 kb on + strand, within PP_0365at 443.312 kb on + strand, within PP_0365at 443.312 kb on + strand, within PP_0365at 443.313 kb on - strand, within PP_0365at 443.455 kb on - strand, within PP_0365at 443.455 kb on - strand, within PP_0365at 443.535 kb on + strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.561 kb on + strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.622 kb on + strand, within PP_0365at 443.622 kb on + strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.786 kb on + strandat 443.786 kb on + strandat 443.786 kb on + strandat 443.787 kb on - strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.826 kb on - strandat 444.043 kb on - strand, within PP_0366at 444.043 kb on - strand, within PP_0366at 444.077 kb on + strand, within PP_0366at 444.077 kb on + strand, within PP_0366at 444.078 kb on - strand, within PP_0366at 444.080 kb on - strand, within PP_0366at 444.184 kb on + strand, within PP_0366at 444.184 kb on + strand, within PP_0366at 444.185 kb on - strand, within PP_0366at 444.185 kb on - strand, within PP_0366at 444.185 kb on - strand, within PP_0366at 444.517 kb on - strandat 444.517 kb on - strandat 444.517 kb on - strandat 444.517 kb on - strandat 444.559 kb on + strandat 444.594 kb on - strandat 444.630 kb on + strandat 444.631 kb on - strandat 444.659 kb on + strandat 444.659 kb on + strandat 444.679 kb on + strandat 444.690 kb on - strandat 444.758 kb on + strand, within PP_0367at 444.758 kb on + strand, within PP_0367at 444.758 kb on + strand, within PP_0367at 444.758 kb on + strand, within PP_0367at 444.758 kb on + strand, within PP_0367at 444.759 kb on - strand, within PP_0367at 444.759 kb on - strand, within PP_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) pH 6
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442,237 + -2.9
442,238 - -3.8
442,238 - -4.6
442,238 - -0.0
442,290 + +0.5
442,290 + -0.6
442,291 - -2.4
442,304 + -2.0
442,304 + -2.1
442,305 - -2.6
442,305 - -2.5
442,305 - -2.1
442,385 + PP_0364 0.14 -4.5
442,650 + PP_0364 0.50 -1.5
442,650 + PP_0364 0.50 -2.3
442,650 + PP_0364 0.50 -3.7
442,651 - PP_0364 0.50 -0.9
442,651 - PP_0364 0.50 -0.5
442,651 - PP_0364 0.50 -4.7
442,651 - PP_0364 0.50 -2.2
442,660 - PP_0364 0.51 -4.2
442,677 + PP_0364 0.54 -1.4
442,677 + PP_0364 0.54 +0.5
442,678 - PP_0364 0.54 -3.2
442,759 + PP_0364 0.65 -3.1
442,759 + PP_0364 0.65 -2.1
442,788 + PP_0364 0.69 -1.7
442,819 + PP_0364 0.73 -2.5
442,819 + PP_0364 0.73 -3.6
442,862 + PP_0364 0.79 -1.0
442,863 - PP_0364 0.79 -0.5
442,911 - PP_0364 0.86 -2.0
442,911 - PP_0364 0.86 -3.0
442,957 + +0.7
443,097 - PP_0365 0.11 -2.1
443,127 + PP_0365 0.14 +0.7
443,312 + PP_0365 0.37 -1.8
443,312 + PP_0365 0.37 -2.5
443,313 - PP_0365 0.37 -3.0
443,455 - PP_0365 0.54 -3.3
443,455 - PP_0365 0.54 -2.5
443,535 + PP_0365 0.64 -3.9
443,536 - PP_0365 0.64 -2.3
443,536 - PP_0365 0.64 -2.5
443,536 - PP_0365 0.64 -1.1
443,561 + PP_0365 0.67 -3.1
443,562 - PP_0365 0.68 -3.1
443,562 - PP_0365 0.68 -2.7
443,562 - PP_0365 0.68 -3.9
443,622 + PP_0365 0.75 -1.3
443,622 + PP_0365 0.75 -2.1
443,623 - PP_0365 0.75 +0.7
443,623 - PP_0365 0.75 -1.5
443,623 - PP_0365 0.75 -3.3
443,623 - PP_0365 0.75 -2.6
443,623 - PP_0365 0.75 +0.3
443,623 - PP_0365 0.75 -1.8
443,623 - PP_0365 0.75 -2.9
443,623 - PP_0365 0.75 +0.3
443,623 - PP_0365 0.75 +0.7
443,623 - PP_0365 0.75 -2.2
443,623 - PP_0365 0.75 -2.8
443,747 + +0.7
443,747 + -2.9
443,747 + -2.0
443,747 + -2.0
443,747 + -0.8
443,748 - -1.0
443,748 - -4.1
443,748 - -2.9
443,748 - -1.9
443,786 + -0.8
443,786 + +1.3
443,786 + -1.9
443,787 - -1.0
443,798 + -0.2
443,798 + -2.8
443,798 + -1.7
443,798 + -1.1
443,798 + -1.3
443,798 + -2.4
443,799 - -1.8
443,799 - -2.1
443,799 - -3.4
443,799 - -1.6
443,799 - -2.7
443,799 - -1.7
443,826 - -1.2
444,043 - PP_0366 0.30 -1.9
444,043 - PP_0366 0.30 -2.4
444,077 + PP_0366 0.35 -3.4
444,077 + PP_0366 0.35 -2.6
444,078 - PP_0366 0.35 +0.3
444,080 - PP_0366 0.36 -5.1
444,184 + PP_0366 0.51 -4.2
444,184 + PP_0366 0.51 -2.6
444,185 - PP_0366 0.51 -2.9
444,185 - PP_0366 0.51 -3.3
444,185 - PP_0366 0.51 -1.9
444,517 - +0.2
444,517 - +1.8
444,517 - +1.6
444,517 - +0.1
444,559 + +0.5
444,594 - +0.5
444,630 + -0.3
444,631 - +0.5
444,659 + -2.7
444,659 + -1.1
444,679 + -0.2
444,690 - -0.3
444,758 + PP_0367 0.20 -1.0
444,758 + PP_0367 0.20 +1.1
444,758 + PP_0367 0.20 +0.1
444,758 + PP_0367 0.20 -2.6
444,758 + PP_0367 0.20 +0.1
444,759 - PP_0367 0.20 +0.9
444,759 - PP_0367 0.20 +0.3

Or see this region's nucleotide sequence