Strain Fitness in Pseudomonas putida KT2440 around PP_4701

Experiment: MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL
5,341,852	+		PP_4700	0.19	-2.1
5,341,901	+		PP_4700	0.24	-3.3
5,341,902	-		PP_4700	0.24	-3.1
5,342,148	-				-1.3
5,342,148	-				-1.9
5,342,148	-		PP_4700	0.53	-2.3
5,342,148	-				-1.8
5,342,192	-		PP_4700	0.58	-3.9
5,342,192	-		PP_4700	0.58	-3.1
5,342,265	-		PP_4700	0.66	-2.7
5,342,284	+		PP_4700	0.69	-1.9
5,342,285	-				-2.2
5,342,285	-		PP_4700	0.69	-3.3
5,342,303	+		PP_4700	0.71	-1.6
5,342,304	-		PP_4700	0.71	-2.7
5,342,414	+		PP_4700	0.84	-2.3
5,342,424	+		PP_4700	0.85	-2.5
5,342,424	+		PP_4700	0.85	-1.3
5,342,425	-				-2.3
5,342,425	-				-2.7
5,342,425	-				-2.2
5,342,493	-				-2.5
5,342,526	-				-0.2
5,342,526	-				+0.4
5,342,608	+				-0.6
5,342,609	-				-1.7
5,342,609	-				+0.3
5,342,658	-				+1.4
5,342,685	+				+0.6
5,342,685	+				-0.0
5,342,685	+				+2.0
5,342,685	+				-1.7
5,342,685	+				+1.1
5,342,685	+				-0.1
5,342,686	-				-0.5
5,342,687	+				+1.4
5,342,688	-				-0.0
5,342,688	-				-0.3
5,342,688	-				+0.6
5,342,767	+				-0.2
5,342,767	+				-0.8
5,342,768	-				+0.7
5,342,768	-				+0.2
5,342,770	+				-0.1
5,342,771	-				+0.0
5,342,771	-				-1.0
5,342,775	+				+0.2
5,342,776	-				-1.9
5,342,776	-				-2.1
5,342,776	-				-0.8
5,343,442	-		PP_4701	0.41	-0.9
5,344,399	+				-0.5
5,344,480	-				+0.4
5,344,480	-				-0.4
5,344,487	-				+0.4
5,344,540	+				-0.7
5,344,540	+				-0.2
5,344,540	+				-0.0
5,344,540	+				-0.0
5,344,541	-				+0.6
5,344,541	-				-0.3
5,344,541	-				+0.4
5,344,551	-				-1.7
5,344,551	-				+0.6
5,344,581	+				-0.6
5,344,581	+				-0.6
5,344,582	-				+0.5
5,344,582	-				+1.6
5,344,582	-				-1.9
5,344,582	-				-0.0
5,344,622	-				-0.8
5,344,673	-				-0.8
5,344,831	+		PP_4702	0.12	-1.0
5,344,831	+		PP_4702	0.12	+0.3
5,344,831	+		PP_4702	0.12	-0.8
5,344,925	-		PP_4702	0.17	-1.2
5,345,000	+		PP_4702	0.21	-1.8
5,345,008	+		PP_4702	0.21	+1.8
5,345,008	+		PP_4702	0.21	-2.6
5,345,008	+		PP_4702	0.21	-0.7
5,345,008	+		PP_4702	0.21	-0.1
5,345,008	+		PP_4702	0.21	+0.4
5,345,009	-		PP_4702	0.21	-0.1
5,345,235	+		PP_4702	0.33	+0.3
5,345,377	+		PP_4702	0.40	-1.3
5,345,377	+		PP_4702	0.40	-0.6
5,345,377	+		PP_4702	0.40	-0.6
5,345,378	-		PP_4702	0.40	+0.2
5,345,378	-		PP_4702	0.40	+0.2
5,345,378	-		PP_4702	0.40	-0.2
5,345,418	+		PP_4702	0.42	-1.9
5,345,419	-		PP_4702	0.42	-0.3
5,345,419	-		PP_4702	0.42	-2.0
5,345,419	-		PP_4702	0.42	-0.5