Strain Fitness in Pseudomonas putida KT2440 around PP_1475

Experiment: MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL
1,678,661	+				+0.1
1,678,661	+				+1.5
1,678,662	-				-0.9
1,678,662	-				-0.3
1,678,694	-				+0.8
1,678,706	+				-0.2
1,678,738	+				-0.2
1,678,738	+				+0.8
1,678,739	-				-0.1
1,678,739	-				-1.1
1,678,739	-				+0.2
1,678,742	+				+0.9
1,678,778	+				+1.2
1,678,778	+				-2.0
1,678,779	-				+0.9
1,678,779	-				+0.1
1,678,779	-				+0.5
1,678,810	-		PP_1474	0.12	+1.1
1,678,810	-		PP_1474	0.12	+0.3
1,678,908	+		PP_1474	0.23	-0.9
1,678,908	+		PP_1474	0.23	+0.6
1,678,919	+		PP_1474	0.24	+0.2
1,678,955	+		PP_1474	0.29	-1.2
1,678,956	-		PP_1474	0.29	-0.8
1,679,102	+		PP_1474	0.45	-0.1
1,679,103	-		PP_1474	0.45	+0.2
1,679,103	-		PP_1474	0.45	+0.1
1,679,103	-		PP_1474	0.45	-1.1
1,679,267	+		PP_1474	0.64	+0.9
1,679,267	+		PP_1474	0.64	-0.3
1,679,267	+		PP_1474	0.64	+0.8
1,679,267	+		PP_1474	0.64	-0.3
1,679,267	+		PP_1474	0.64	-0.3
1,679,267	+		PP_1474	0.64	-0.0
1,679,267	+		PP_1474	0.64	+0.2
1,679,267	+		PP_1474	0.64	-0.3
1,679,268	-		PP_1474	0.64	+0.5
1,679,268	-		PP_1474	0.64	-0.4
1,679,268	-		PP_1474	0.64	-1.2
1,679,396	-		PP_1474	0.79	-0.6
1,679,477	-				+0.5
1,679,648	-				+0.5
1,679,676	-				-0.4
1,679,807	-		PP_1475	0.17	+0.6
1,679,839	+		PP_1475	0.20	-0.8
1,679,840	-		PP_1475	0.20	-0.7
1,679,840	-		PP_1475	0.20	+1.7
1,679,843	+		PP_1475	0.20	-1.1
1,679,844	-		PP_1475	0.20	-2.2
1,679,929	+		PP_1475	0.27	+0.5
1,679,929	+		PP_1475	0.27	-1.8
1,679,930	-		PP_1475	0.27	-0.3
1,680,148	-		PP_1475	0.46	+0.6
1,680,190	+		PP_1475	0.49	-0.2
1,680,190	+		PP_1475	0.49	-0.3
1,680,344	-		PP_1475	0.62	+0.7
1,680,344	-		PP_1475	0.62	-0.7
1,680,638	-		PP_1475	0.86	-0.4
1,680,767	+				+0.5
1,680,768	-				+0.2
1,680,893	-				+0.1
1,680,953	-				+0.1
1,681,069	+		PP_1476	0.25	-0.6
1,681,069	+		PP_1476	0.25	-0.9
1,681,070	-		PP_1476	0.26	+0.5
1,681,082	-		PP_1476	0.28	+0.2
1,681,250	-		PP_1476	0.59	+2.7
1,681,276	-		PP_1476	0.64	+0.1
1,681,369	-		PP_1476	0.81	+0.7
1,681,369	-		PP_1476	0.81	-2.1
1,681,402	-		PP_1476	0.87	-0.7
1,681,402	-				+1.7
1,681,620	+				-0.2
1,681,783	-		PP_1477	0.18	-1.3
1,681,783	-		PP_1477	0.18	+0.3