Strain Fitness in Pseudomonas putida KT2440 around PP_1088

Experiment: MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1087 and PP_1088 are separated by 370 nucleotidesPP_1088 and PP_1089 are separated by 67 nucleotidesPP_1089 and PP_1090 are separated by 366 nucleotides PP_1087: PP_1087 - Outer membrane protein, OmpA family, at 1,245,646 to 1,246,599 _1087 PP_1088: PP_1088 - Argininosuccinate synthase, at 1,246,970 to 1,248,187 _1088 PP_1089: PP_1089 - conserved protein of unknown function, at 1,248,255 to 1,248,737 _1089 PP_1090: PP_1090 - putative Virulence factors positive transcription regulator BvgA, at 1,249,104 to 1,249,727 _1090 Position (kb) 1246 1247 1248 1249Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1246.035 kb on + strand, within PP_1087at 1246.035 kb on + strand, within PP_1087at 1246.036 kb on - strand, within PP_1087at 1246.054 kb on + strand, within PP_1087at 1246.055 kb on - strand, within PP_1087at 1246.055 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.126 kb on + strand, within PP_1087at 1246.162 kb on + strand, within PP_1087at 1246.163 kb on - strand, within PP_1087at 1246.163 kb on - strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.327 kb on - strand, within PP_1087at 1246.433 kb on - strand, within PP_1087at 1246.847 kb on - strandat 1246.909 kb on - strandat 1246.949 kb on - strandat 1246.949 kb on - strandat 1246.993 kb on - strandat 1246.993 kb on - strandat 1246.993 kb on - strandat 1247.017 kb on + strandat 1247.017 kb on + strandat 1247.047 kb on + strandat 1247.047 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.150 kb on + strand, within PP_1088at 1247.150 kb on + strand, within PP_1088at 1247.150 kb on + strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.370 kb on - strand, within PP_1088at 1247.447 kb on + strand, within PP_1088at 1247.447 kb on + strand, within PP_1088at 1247.448 kb on - strand, within PP_1088at 1247.448 kb on - strand, within PP_1088at 1247.534 kb on + strand, within PP_1088at 1247.535 kb on - strand, within PP_1088at 1247.557 kb on + strand, within PP_1088at 1247.627 kb on - strand, within PP_1088at 1247.627 kb on - strand, within PP_1088at 1247.627 kb on - strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.630 kb on + strand, within PP_1088at 1247.631 kb on - strand, within PP_1088at 1247.631 kb on - strand, within PP_1088at 1247.631 kb on - strand, within PP_1088at 1247.631 kb on - strandat 1247.631 kb on - strand, within PP_1088at 1247.768 kb on + strand, within PP_1088at 1247.769 kb on - strand, within PP_1088at 1247.795 kb on + strand, within PP_1088at 1247.795 kb on + strand, within PP_1088at 1247.795 kb on + strand, within PP_1088at 1247.795 kb on + strand, within PP_1088at 1247.812 kb on + strand, within PP_1088at 1247.900 kb on + strand, within PP_1088at 1247.900 kb on + strand, within PP_1088at 1247.900 kb on + strand, within PP_1088at 1247.901 kb on - strand, within PP_1088at 1247.901 kb on - strand, within PP_1088at 1247.901 kb on - strand, within PP_1088at 1247.915 kb on + strand, within PP_1088at 1247.916 kb on - strand, within PP_1088at 1247.916 kb on - strand, within PP_1088at 1248.011 kb on + strand, within PP_1088at 1248.101 kb on + strandat 1248.101 kb on + strandat 1248.102 kb on - strandat 1248.102 kb on - strandat 1248.149 kb on - strandat 1248.149 kb on - strandat 1248.149 kb on - strandat 1248.299 kb on - strandat 1248.541 kb on + strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.553 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.623 kb on - strand, within PP_1089at 1248.623 kb on - strand, within PP_1089at 1248.737 kb on + strandat 1248.737 kb on + strandat 1248.737 kb on + strandat 1248.738 kb on - strandat 1248.738 kb on - strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.740 kb on - strandat 1248.774 kb on + strandat 1248.895 kb on - strandat 1248.912 kb on - strandat 1248.967 kb on - strandat 1248.993 kb on - strandat 1249.001 kb on + strandat 1249.031 kb on + strandat 1249.092 kb on + strandat 1249.092 kb on + strandat 1249.110 kb on - strandat 1249.142 kb on - strandat 1249.179 kb on + strand, within PP_1090at 1249.179 kb on + strand, within PP_1090

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL
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1,246,035 + PP_1087 0.41 -1.6
1,246,035 + PP_1087 0.41 -0.9
1,246,036 - PP_1087 0.41 +0.5
1,246,054 + PP_1087 0.43 -0.8
1,246,055 - PP_1087 0.43 -0.1
1,246,055 - PP_1087 0.43 +0.7
1,246,118 - PP_1087 0.49 +0.2
1,246,118 - PP_1087 0.49 +0.9
1,246,118 - PP_1087 0.49 +0.2
1,246,126 + PP_1087 0.50 -0.7
1,246,162 + PP_1087 0.54 -0.1
1,246,163 - PP_1087 0.54 -0.3
1,246,163 - PP_1087 0.54 -1.3
1,246,255 + PP_1087 0.64 +0.2
1,246,255 + PP_1087 0.64 +0.5
1,246,255 + PP_1087 0.64 +0.0
1,246,256 - PP_1087 0.64 +0.4
1,246,256 - PP_1087 0.64 -0.2
1,246,256 - PP_1087 0.64 +0.4
1,246,327 - PP_1087 0.71 +0.4
1,246,433 - PP_1087 0.82 +0.6
1,246,847 - -1.3
1,246,909 - -3.9
1,246,949 - -2.9
1,246,949 - -1.2
1,246,993 - -1.6
1,246,993 - -1.9
1,246,993 - -1.7
1,247,017 + -3.1
1,247,017 + -2.2
1,247,047 + -3.5
1,247,047 + -2.6
1,247,051 + -3.2
1,247,051 + -5.7
1,247,051 + -2.6
1,247,051 + -2.0
1,247,052 - -2.5
1,247,052 - -0.3
1,247,052 - -3.5
1,247,052 - -6.4
1,247,052 - -4.3
1,247,150 + PP_1088 0.15 -5.9
1,247,150 + PP_1088 0.15 -3.5
1,247,150 + PP_1088 0.15 -1.2
1,247,151 - PP_1088 0.15 -4.5
1,247,151 - PP_1088 0.15 -2.7
1,247,151 - PP_1088 0.15 -1.5
1,247,151 - PP_1088 0.15 -3.0
1,247,369 + PP_1088 0.33 -1.0
1,247,369 + PP_1088 0.33 -5.2
1,247,369 + PP_1088 0.33 -2.1
1,247,370 - PP_1088 0.33 -4.1
1,247,447 + PP_1088 0.39 -3.4
1,247,447 + PP_1088 0.39 -1.9
1,247,448 - PP_1088 0.39 -4.6
1,247,448 - PP_1088 0.39 -1.0
1,247,534 + PP_1088 0.46 -2.1
1,247,535 - PP_1088 0.46 -3.9
1,247,557 + PP_1088 0.48 -3.9
1,247,627 - PP_1088 0.54 -2.9
1,247,627 - PP_1088 0.54 -2.4
1,247,627 - PP_1088 0.54 -6.1
1,247,630 + PP_1088 0.54 -6.5
1,247,630 + PP_1088 0.54 -2.5
1,247,630 + PP_1088 0.54 -5.6
1,247,630 + PP_1088 0.54 -3.8
1,247,630 + PP_1088 0.54 -6.5
1,247,630 + PP_1088 0.54 -2.4
1,247,631 - PP_1088 0.54 -2.7
1,247,631 - PP_1088 0.54 -1.0
1,247,631 - PP_1088 0.54 -3.3
1,247,631 - -2.1
1,247,631 - PP_1088 0.54 -2.5
1,247,768 + PP_1088 0.66 -3.9
1,247,769 - PP_1088 0.66 -1.3
1,247,795 + PP_1088 0.68 -0.2
1,247,795 + PP_1088 0.68 -1.7
1,247,795 + PP_1088 0.68 -3.2
1,247,795 + PP_1088 0.68 -6.6
1,247,812 + PP_1088 0.69 -1.9
1,247,900 + PP_1088 0.76 -4.7
1,247,900 + PP_1088 0.76 -1.2
1,247,900 + PP_1088 0.76 -3.6
1,247,901 - PP_1088 0.76 -2.3
1,247,901 - PP_1088 0.76 -2.7
1,247,901 - PP_1088 0.76 -3.3
1,247,915 + PP_1088 0.78 -1.9
1,247,916 - PP_1088 0.78 -2.7
1,247,916 - PP_1088 0.78 -3.4
1,248,011 + PP_1088 0.85 -4.5
1,248,101 + -3.4
1,248,101 + -4.3
1,248,102 - +0.3
1,248,102 - -3.7
1,248,149 - -4.3
1,248,149 - -4.3
1,248,149 - -1.2
1,248,299 - -2.2
1,248,541 + PP_1089 0.59 +0.4
1,248,542 - PP_1089 0.59 +0.1
1,248,542 - PP_1089 0.59 -1.2
1,248,542 - PP_1089 0.59 +0.3
1,248,542 - PP_1089 0.59 -0.7
1,248,553 + PP_1089 0.62 -1.2
1,248,622 + PP_1089 0.76 +1.0
1,248,622 + PP_1089 0.76 -0.6
1,248,622 + PP_1089 0.76 -0.7
1,248,623 - PP_1089 0.76 +0.2
1,248,623 - PP_1089 0.76 -0.1
1,248,737 + -0.1
1,248,737 + -1.7
1,248,737 + -0.5
1,248,738 - +1.1
1,248,738 - -0.2
1,248,739 + -0.5
1,248,739 + +0.6
1,248,739 + +0.4
1,248,739 + +0.1
1,248,739 + +0.6
1,248,740 - -0.2
1,248,774 + +0.2
1,248,895 - -0.4
1,248,912 - -0.5
1,248,967 - +0.3
1,248,993 - -0.0
1,249,001 + -1.4
1,249,031 + -0.7
1,249,092 + -0.6
1,249,092 + +1.1
1,249,110 - -0.2
1,249,142 - +0.3
1,249,179 + PP_1090 0.12 +0.8
1,249,179 + PP_1090 0.12 +0.4

Or see this region's nucleotide sequence