Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5722 and PP_5209 are separated by 163 nucleotides PP_5209 and PP_5210 are separated by 100 nucleotides PP_5210 and PP_5211 are separated by 84 nucleotides PP_5211 and PP_5212 are separated by 339 nucleotides
PP_5722: PP_5722 - conserved protein of unknown function of phage origin, at 5,941,455 to 5,941,889
_5722
PP_5209: PP_5209 - conserved exported protein of unknown function, at 5,942,053 to 5,942,514
_5209
PP_5210: PP_5210 - Alcohol dehydrogenase, zinc-containing, at 5,942,615 to 5,943,592
_5210
PP_5211: PP_5211 - ChaC-related protein, at 5,943,677 to 5,944,234
_5211
PP_5212: PP_5212 - Oxidoreductase, iron-sulfur-binding, at 5,944,574 to 5,945,542
_5212
Position (kb) 5942
5943
5944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5941.631 kb on + strand, within PP_5722 at 5941.632 kb on - strand, within PP_5722 at 5941.642 kb on + strand, within PP_5722 at 5941.643 kb on - strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.690 kb on + strand, within PP_5722 at 5941.691 kb on - strand, within PP_5722 at 5941.691 kb on - strand, within PP_5722 at 5941.739 kb on + strand, within PP_5722 at 5941.752 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.761 kb on + strand, within PP_5722 at 5941.762 kb on - strand, within PP_5722 at 5941.855 kb on - strand at 5941.855 kb on - strand at 5941.855 kb on - strand at 5941.928 kb on + strand at 5941.928 kb on + strand at 5941.928 kb on + strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.929 kb on - strand at 5941.969 kb on - strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.990 kb on + strand at 5941.991 kb on - strand at 5941.991 kb on - strand at 5941.991 kb on - strand at 5942.002 kb on - strand at 5942.024 kb on - strand at 5942.024 kb on - strand at 5942.024 kb on - strand at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.249 kb on - strand, within PP_5209 at 5942.301 kb on - strand, within PP_5209 at 5942.301 kb on - strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.333 kb on + strand, within PP_5209 at 5942.334 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.367 kb on - strand, within PP_5209 at 5942.473 kb on + strand at 5942.473 kb on + strand at 5942.474 kb on - strand at 5942.490 kb on + strand at 5942.490 kb on + strand at 5942.490 kb on + strand at 5942.491 kb on - strand at 5942.577 kb on + strand at 5942.578 kb on - strand at 5942.578 kb on - strand at 5942.578 kb on - strand at 5942.583 kb on + strand at 5942.608 kb on - strand at 5942.765 kb on + strand, within PP_5210 at 5942.765 kb on + strand, within PP_5210 at 5942.766 kb on - strand, within PP_5210 at 5942.766 kb on - strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.921 kb on + strand, within PP_5210 at 5942.922 kb on - strand, within PP_5210 at 5942.922 kb on - strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.984 kb on + strand, within PP_5210 at 5942.985 kb on - strand, within PP_5210 at 5943.048 kb on + strand, within PP_5210 at 5943.185 kb on + strand, within PP_5210 at 5943.186 kb on - strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.251 kb on + strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.252 kb on - strand, within PP_5210 at 5943.509 kb on + strand at 5943.509 kb on + strand at 5943.510 kb on - strand at 5943.510 kb on - strand at 5943.649 kb on + strand at 5943.774 kb on + strand, within PP_5211 at 5943.774 kb on + strand, within PP_5211 at 5943.775 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.124 kb on + strand, within PP_5211 at 5944.182 kb on + strand at 5944.258 kb on + strand at 5944.258 kb on + strand at 5944.309 kb on + strand at 5944.310 kb on - strand at 5944.327 kb on + strand at 5944.328 kb on - strand at 5944.328 kb on - strand at 5944.341 kb on + strand at 5944.354 kb on + strand at 5944.354 kb on + strand at 5944.355 kb on - strand at 5944.355 kb on - strand at 5944.363 kb on - strand at 5944.377 kb on - strand at 5944.400 kb on - strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.443 kb on - strand at 5944.493 kb on + strand at 5944.494 kb on - strand at 5944.494 kb on - strand at 5944.517 kb on + strand at 5944.539 kb on + strand at 5944.547 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.576 kb on - strand at 5944.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL remove 5,941,631 + PP_5722 0.40 -0.8 5,941,632 - PP_5722 0.41 +2.3 5,941,642 + PP_5722 0.43 -0.3 5,941,643 - PP_5722 0.43 +0.2 5,941,690 + PP_5722 0.54 -1.0 5,941,690 + PP_5722 0.54 +0.7 5,941,690 + PP_5722 0.54 +0.1 5,941,691 - PP_5722 0.54 -0.1 5,941,691 - PP_5722 0.54 +0.2 5,941,739 + PP_5722 0.65 -0.6 5,941,752 + PP_5722 0.68 +0.1 5,941,761 + PP_5722 0.70 +0.3 5,941,761 + PP_5722 0.70 +0.8 5,941,761 + PP_5722 0.70 -0.1 5,941,762 - PP_5722 0.71 +0.3 5,941,855 - +0.1 5,941,855 - +0.1 5,941,855 - -0.3 5,941,928 + +0.4 5,941,928 + +0.2 5,941,928 + -0.7 5,941,929 - -0.4 5,941,929 - +0.4 5,941,929 - +1.0 5,941,929 - -0.5 5,941,969 - +0.2 5,941,990 + +0.6 5,941,990 + -1.3 5,941,990 + -0.6 5,941,990 + -1.0 5,941,991 - -0.1 5,941,991 - +0.5 5,941,991 - -0.4 5,942,002 - +1.6 5,942,024 - -0.1 5,942,024 - -0.0 5,942,024 - +0.2 5,942,249 - PP_5209 0.42 -1.8 5,942,249 - PP_5209 0.42 -1.7 5,942,249 - PP_5209 0.42 +0.2 5,942,249 - PP_5209 0.42 +0.8 5,942,301 - PP_5209 0.54 +0.5 5,942,301 - PP_5209 0.54 -1.0 5,942,333 + PP_5209 0.61 -0.5 5,942,333 + PP_5209 0.61 -0.6 5,942,333 + PP_5209 0.61 -1.8 5,942,333 + PP_5209 0.61 -0.6 5,942,334 - PP_5209 0.61 +1.0 5,942,367 - PP_5209 0.68 +0.1 5,942,367 - PP_5209 0.68 -0.1 5,942,367 - PP_5209 0.68 +0.3 5,942,473 + +0.2 5,942,473 + +1.3 5,942,474 - -0.0 5,942,490 + -0.1 5,942,490 + -0.2 5,942,490 + +0.4 5,942,491 - +1.0 5,942,577 + +0.2 5,942,578 - -2.1 5,942,578 - -0.3 5,942,578 - -0.1 5,942,583 + +0.6 5,942,608 - -0.3 5,942,765 + PP_5210 0.15 +0.3 5,942,765 + PP_5210 0.15 +0.1 5,942,766 - PP_5210 0.15 -0.0 5,942,766 - PP_5210 0.15 -2.2 5,942,921 + PP_5210 0.31 -1.2 5,942,921 + PP_5210 0.31 -1.0 5,942,921 + PP_5210 0.31 +0.5 5,942,921 + PP_5210 0.31 -2.0 5,942,922 - PP_5210 0.31 -0.4 5,942,922 - PP_5210 0.31 +0.0 5,942,984 + PP_5210 0.38 +0.1 5,942,984 + PP_5210 0.38 +0.4 5,942,984 + PP_5210 0.38 +0.2 5,942,985 - PP_5210 0.38 -2.6 5,943,048 + PP_5210 0.44 -0.4 5,943,185 + PP_5210 0.58 +0.4 5,943,186 - PP_5210 0.58 -1.1 5,943,251 + PP_5210 0.65 +0.3 5,943,251 + PP_5210 0.65 +0.1 5,943,251 + PP_5210 0.65 +0.7 5,943,251 + PP_5210 0.65 +0.8 5,943,251 + PP_5210 0.65 -0.6 5,943,252 - PP_5210 0.65 -1.0 5,943,252 - PP_5210 0.65 -1.4 5,943,252 - PP_5210 0.65 +0.4 5,943,252 - PP_5210 0.65 +0.3 5,943,252 - PP_5210 0.65 +0.5 5,943,252 - PP_5210 0.65 -0.4 5,943,252 - PP_5210 0.65 +0.2 5,943,509 + -0.8 5,943,509 + +1.0 5,943,510 - -2.1 5,943,510 - -0.5 5,943,649 + +0.4 5,943,774 + PP_5211 0.17 +1.2 5,943,774 + PP_5211 0.17 +0.7 5,943,775 - PP_5211 0.18 +0.3 5,943,853 - PP_5211 0.32 -0.6 5,943,853 - PP_5211 0.32 +0.4 5,944,101 + PP_5211 0.76 +0.3 5,944,101 + PP_5211 0.76 -0.7 5,944,102 - PP_5211 0.76 +0.8 5,944,102 - PP_5211 0.76 -0.6 5,944,124 + PP_5211 0.80 +0.4 5,944,182 + -0.2 5,944,258 + -0.1 5,944,258 + +0.6 5,944,309 + +0.4 5,944,310 - -0.4 5,944,327 + -0.7 5,944,328 - -1.2 5,944,328 - -0.9 5,944,341 + +1.3 5,944,354 + -0.0 5,944,354 + +0.4 5,944,355 - -1.0 5,944,355 - -0.5 5,944,363 - -0.9 5,944,377 - +0.4 5,944,400 - +0.0 5,944,423 + +0.3 5,944,423 + +0.6 5,944,423 + +1.1 5,944,423 + -1.2 5,944,423 + +0.9 5,944,423 + +0.2 5,944,423 + +0.6 5,944,424 - -0.0 5,944,424 - -0.1 5,944,424 - +1.6 5,944,424 - -1.9 5,944,424 - +0.5 5,944,443 - +0.4 5,944,493 + +0.4 5,944,494 - +1.0 5,944,494 - +0.4 5,944,517 + -0.1 5,944,539 + -2.5 5,944,547 + -0.5 5,944,549 + -0.6 5,944,549 + +0.4 5,944,549 + +1.7 5,944,576 - -0.7 5,944,576 - -0.1
Or see this region's nucleotide sequence