Strain Fitness in Pseudomonas putida KT2440 around PP_4363

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
4,952,358	+				-0.1
4,952,378	+				+1.9
4,952,439	-		PP_4362	0.28	-0.1
4,952,627	+		PP_4362	0.83	+0.2
4,952,627	+		PP_4362	0.83	+0.9
4,952,628	-		PP_4362	0.84	-1.1
4,952,628	-		PP_4362	0.84	-0.4
4,952,628	-		PP_4362	0.84	-0.7
4,952,662	+				-0.5
4,952,663	-				-0.4
4,952,676	+				-0.0
4,952,676	+				-0.7
4,952,676	+				-1.7
4,952,676	+				-1.3
4,952,677	-				+1.9
4,952,677	-				+0.4
4,952,677	-				-0.4
4,952,718	+				-0.1
4,952,746	+				+0.0
4,952,746	+				-1.4
4,952,746	+				-0.6
4,952,956	+		PP_4363	0.13	+1.9
4,952,956	+				+0.3
4,952,956	+		PP_4363	0.13	-1.3
4,952,957	-		PP_4363	0.13	-1.5
4,952,957	-		PP_4363	0.13	-1.9
4,952,957	-		PP_4363	0.13	-0.7
4,953,002	+		PP_4363	0.15	-2.7
4,953,005	+		PP_4363	0.16	-3.7
4,953,005	+		PP_4363	0.16	-2.4
4,953,080	+		PP_4363	0.20	-1.6
4,953,081	-		PP_4363	0.20	-0.7
4,953,081	-		PP_4363	0.20	-0.6
4,953,081	-		PP_4363	0.20	-0.9
4,953,081	-		PP_4363	0.20	-1.8
4,953,114	+		PP_4363	0.22	-0.2
4,953,115	-		PP_4363	0.22	-1.3
4,953,159	-		PP_4363	0.25	-1.6
4,953,240	+		PP_4363	0.30	-3.6
4,953,240	+		PP_4363	0.30	-1.7
4,953,240	+		PP_4363	0.30	-1.0
4,953,240	+		PP_4363	0.30	-0.1
4,953,240	+		PP_4363	0.30	-1.1
4,953,248	+		PP_4363	0.30	-0.7
4,953,249	-		PP_4363	0.30	-0.7
4,953,249	-		PP_4363	0.30	+0.1
4,953,249	-		PP_4363	0.30	-1.2
4,953,294	+		PP_4363	0.33	-0.9
4,953,413	-		PP_4363	0.40	-0.5
4,953,612	+		PP_4363	0.52	-2.1
4,953,612	+		PP_4363	0.52	-1.4
4,953,613	-		PP_4363	0.52	-1.1
4,953,681	+		PP_4363	0.56	-1.6
4,953,681	+		PP_4363	0.56	-0.6
4,953,682	-		PP_4363	0.56	+0.4
4,953,764	+		PP_4363	0.61	-1.3
4,953,764	+				+1.3
4,953,765	-		PP_4363	0.61	+0.3
4,954,100	+		PP_4363	0.80	-0.2
4,954,296	-				-1.1
4,954,333	+				+0.4
4,954,333	+				-1.0
4,954,334	-				+0.2
4,954,588	+		PP_4364	0.48	-3.2
4,954,588	+		PP_4364	0.48	-3.1
4,954,589	-		PP_4364	0.49	-4.1
4,954,589	-		PP_4364	0.49	-6.0
4,954,589	-		PP_4364	0.49	-1.7
4,954,589	-		PP_4364	0.49	-2.0
4,954,645	+		PP_4364	0.67	-2.5
4,954,748	+				-3.5
4,954,784	+				-3.3
4,954,893	+				-0.0
4,954,894	-				+0.4
4,954,923	+				+0.2
4,954,923	+				+0.4
4,954,923	+				+1.5
4,954,923	+				-0.1
4,954,923	+				+0.0
4,954,923	+				+1.3
4,954,923	+				+0.1
4,954,923	+				-0.1
4,954,923	+				-0.9
4,954,923	+				+1.0
4,954,923	+				-1.5
4,954,923	+				-0.9
4,954,923	+				+0.5
4,954,924	-				-0.6
4,954,924	-				-0.6
4,954,924	-				-1.1
4,954,924	-				+0.6
4,954,924	-				-2.6
4,954,924	-				-0.6
4,954,924	-				+0.1
4,954,924	-				+0.7
4,954,924	-				+1.2
4,954,924	-				-0.1
4,954,924	-				+0.8
4,954,924	-				+0.4
4,954,924	-				+0.6
4,954,924	-				+0.3
4,954,925	+				-3.1
4,954,925	+				-2.5
4,954,926	-				+1.0
4,954,926	-				-0.3
4,955,022	-		PP_4365	0.22	+1.3
4,955,022	-		PP_4365	0.22	-0.8
4,955,022	-		PP_4365	0.22	-1.2
4,955,052	+		PP_4365	0.29	-1.7
4,955,052	+		PP_4365	0.29	-1.9
4,955,053	-		PP_4365	0.29	-0.2
4,955,069	-		PP_4365	0.32	-1.3
4,955,220	+		PP_4365	0.66	-0.1
4,955,379	+				+0.2
4,955,380	-				+1.9