Strain Fitness in Pseudomonas putida KT2440 around PP_5681

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
5,044,074	+		PP_4448	0.65	+1.1
5,044,151	-		PP_4448	0.69	-0.3
5,044,185	+		PP_4448	0.71	-0.8
5,044,191	+		PP_4448	0.71	+0.5
5,044,249	+		PP_4448	0.75	+0.0
5,044,249	+		PP_4448	0.75	+0.1
5,044,273	-		PP_4448	0.76	-0.2
5,044,273	-		PP_4448	0.76	-1.6
5,044,464	+		PP_4448	0.87	+0.9
5,044,464	+		PP_4448	0.87	+0.2
5,044,465	-		PP_4448	0.87	-2.2
5,044,688	+				-0.1
5,044,688	+				+0.2
5,044,689	-				-0.5
5,044,689	-				+0.2
5,044,692	+				+0.2
5,044,692	+				+1.3
5,044,692	+				+0.2
5,044,693	-				-2.2
5,044,743	-				+0.1
5,044,743	-				+0.5
5,044,743	-				+0.2
5,044,743	-				-0.2
5,044,808	+				+1.9
5,044,809	-				-1.9
5,044,819	+				-0.2
5,044,819	+				+0.9
5,044,819	+				+0.3
5,044,866	+				+0.3
5,044,867	-				+0.9
5,044,930	-				-0.1
5,044,934	+				+1.9
5,044,934	+				-1.2
5,044,934	+				-0.8
5,044,934	+				-0.4
5,044,935	-				-1.2
5,045,042	+		PP_5681	0.34	+0.4
5,045,043	-		PP_5681	0.34	+0.3
5,045,044	+		PP_5681	0.35	+0.9
5,045,045	-		PP_5681	0.35	+0.6
5,045,045	-		PP_5681	0.35	+0.4
5,045,045	-		PP_5681	0.35	+0.1
5,045,045	-		PP_5681	0.35	+0.5
5,045,130	-		PP_5681	0.71	+0.0
5,045,259	+				+0.4
5,045,293	+				+1.0
5,045,298	+				+0.1
5,045,312	-				+1.5
5,045,312	-				-0.2
5,045,325	-				-1.3
5,045,329	+				-0.3
5,045,330	-				+0.2
5,045,381	-				-0.2
5,045,393	+				+1.7
5,045,393	+				-0.7
5,045,393	+				+1.6
5,045,475	+		PP_4449	0.38	+0.3
5,045,476	-		PP_4449	0.38	-1.2
5,045,530	+		PP_4449	0.59	-0.4
5,045,531	-		PP_4449	0.60	+0.2
5,045,570	+		PP_4449	0.75	+0.5
5,045,570	+		PP_4449	0.75	-0.2
5,045,625	+				+0.2
5,045,625	+				-0.2
5,045,626	-				-0.0
5,045,626	-				+3.5
5,045,702	+				+0.8
5,045,727	+				-0.6
5,045,728	-				+0.4
5,045,728	-				-0.3
5,045,735	+				-0.5
5,045,735	+				+1.9
5,045,736	-				+0.7
5,045,761	+		PP_5682	0.17	-0.1
5,045,776	+		PP_5682	0.24	+0.6
5,045,834	+		PP_5682	0.51	-0.1
5,045,835	-		PP_5682	0.52	+0.4
5,045,835	-		PP_5682	0.52	+1.4
5,045,860	-		PP_5682	0.64	-0.2
5,045,866	+		PP_5682	0.67	+0.2
5,045,866	+		PP_5682	0.67	-0.4
5,045,867	-		PP_5682	0.67	+0.1
5,045,867	-		PP_5682	0.67	-0.6
5,045,867	-		PP_5682	0.67	-0.9
5,045,889	+		PP_5682	0.78	-0.3
5,045,890	-		PP_5682	0.78	+0.7
5,045,890	-		PP_5682	0.78	-0.9
5,045,890	-		PP_5682	0.78	-0.4
5,045,910	-		PP_5682	0.88	+1.9
5,045,996	+				+0.0
5,045,997	-				-0.1
5,046,004	-				-0.2
5,046,018	+				-0.4
5,046,019	-				+0.1
5,046,019	-				+0.3
5,046,019	-				-0.5
5,046,019	-				+0.1
5,046,019	-				-0.1
5,046,038	-				+0.7
5,046,053	+				-0.7
5,046,053	+				-1.2
5,046,054	-				+1.1
5,046,175	-		PP_4450	0.21	-1.9