Strain Fitness in Pseudomonas putida KT2440 around PP_4568

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
5,187,348	+		PP_4566	0.78	-0.4
5,187,348	+		PP_4566	0.78	+0.0
5,187,348	+		PP_4566	0.78	+0.1
5,187,349	-		PP_4566	0.78	-0.0
5,187,349	-		PP_4566	0.78	+1.4
5,187,356	+		PP_4566	0.79	-1.0
5,187,357	+		PP_4566	0.79	-0.7
5,187,388	+		PP_4566	0.83	-0.3
5,187,430	+		PP_4566	0.87	-0.6
5,187,430	+		PP_4566	0.87	-0.2
5,187,431	-		PP_4566	0.88	-0.1
5,187,431	-		PP_4566	0.88	+0.6
5,187,478	+				+0.6
5,187,478	+				+0.4
5,187,478	+				+0.5
5,187,478	+				-0.8
5,187,479	-				+0.6
5,187,566	-		PP_4567	0.14	+0.3
5,187,608	-		PP_4567	0.22	+0.2
5,187,658	+		PP_4567	0.31	+0.5
5,187,674	+		PP_4567	0.34	+0.7
5,187,674	+		PP_4567	0.34	-0.4
5,187,674	+		PP_4567	0.34	+1.2
5,187,674	+		PP_4567	0.34	+0.7
5,187,674	+		PP_4567	0.34	+0.8
5,187,674	+		PP_4567	0.34	+1.0
5,187,675	-		PP_4567	0.35	+1.5
5,187,675	-		PP_4567	0.35	-1.4
5,187,675	-		PP_4567	0.35	+0.1
5,187,688	+		PP_4567	0.37	+0.9
5,187,689	-		PP_4567	0.37	-0.6
5,187,689	-		PP_4567	0.37	+0.1
5,187,822	-		PP_4567	0.63	+1.3
5,187,914	-		PP_4567	0.81	-0.2
5,187,925	+		PP_4567	0.83	+0.4
5,187,925	+		PP_4567	0.83	+0.7
5,187,925	+		PP_4567	0.83	+0.5
5,187,926	-		PP_4567	0.83	-0.3
5,187,928	+		PP_4567	0.84	-1.0
5,187,928	+		PP_4567	0.84	+0.0
5,187,928	+				+3.0
5,187,929	-		PP_4567	0.84	+0.4
5,187,929	-		PP_4567	0.84	-1.1
5,187,929	-		PP_4567	0.84	+1.3
5,187,929	-		PP_4567	0.84	-0.9
5,187,929	-		PP_4567	0.84	-0.5
5,188,016	+				-0.5
5,188,016	+				-0.4
5,188,160	+		PP_4568	0.16	+0.7
5,188,160	+		PP_4568	0.16	+0.9
5,188,161	-		PP_4568	0.17	+0.8
5,188,161	-		PP_4568	0.17	-0.3
5,188,375	-		PP_4568	0.41	-0.4
5,188,450	+		PP_4568	0.49	+2.2
5,188,476	-		PP_4568	0.52	+1.0
5,188,573	+		PP_4568	0.63	-0.8
5,188,573	+		PP_4568	0.63	+1.3
5,188,574	-		PP_4568	0.63	-0.4
5,188,614	+		PP_4568	0.68	+0.4
5,188,631	+		PP_4568	0.70	-1.6
5,188,631	+		PP_4568	0.70	+0.3
5,188,643	+		PP_4568	0.71	-0.6
5,188,718	-		PP_4568	0.80	+0.5
5,188,854	+				+0.0
5,188,854	+				+1.0
5,188,855	-				+0.0
5,188,911	+				-1.5
5,188,911	+				+0.6
5,188,911	+				-0.3
5,188,912	-				+0.9
5,188,912	-				-1.4
5,188,914	+				+0.1
5,188,914	+				-0.0
5,188,914	+				+0.4
5,188,914	+				-1.0
5,188,922	+				-1.2
5,188,923	-				-2.6
5,188,975	+				+0.1
5,188,976	-				+0.4
5,189,045	+		PP_4569	0.11	-0.1
5,189,046	-		PP_4569	0.12	+0.4
5,189,046	-		PP_4569	0.12	+0.2
5,189,108	-		PP_4569	0.33	-1.4
5,189,347	-				-0.7
5,189,347	-				+0.2
5,189,355	+				-0.1
5,189,355	+				+0.8
5,189,376	-				+0.4
5,189,394	+				-0.2
5,189,549	-		PP_4570	0.23	-0.1
5,189,549	-		PP_4570	0.23	+0.3
5,189,575	+		PP_4570	0.26	+1.4
5,189,649	+		PP_4570	0.34	+0.3
5,189,649	+		PP_4570	0.34	-0.2
5,189,650	-		PP_4570	0.34	-0.1
5,189,650	-		PP_4570	0.34	-0.4
5,189,650	-		PP_4570	0.34	-0.1
5,189,691	+		PP_4570	0.39	+0.8
5,189,691	+		PP_4570	0.39	-0.3
5,189,709	+		PP_4570	0.40	-0.1
5,189,709	+		PP_4570	0.40	-1.7
5,189,710	-		PP_4570	0.41	+1.0
5,189,710	-		PP_4570	0.41	+0.1
5,189,710	-		PP_4570	0.41	-0.9