Strain Fitness in Pseudomonas putida KT2440 around PP_4373

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
4,963,038	+		PP_4372	0.49	+0.3
4,963,276	+		PP_4372	0.69	+0.5
4,963,277	-		PP_4372	0.69	-0.1
4,963,277	-		PP_4372	0.69	+0.6
4,963,277	-		PP_4372	0.69	-1.8
4,963,521	+		PP_4372	0.89	-0.4
4,963,522	-		PP_4372	0.89	+0.2
4,963,522	-		PP_4372	0.89	-0.1
4,963,634	+				+0.6
4,963,706	+				-0.8
4,963,707	-				-1.8
4,963,707	-				+0.3
4,963,747	-				+0.1
4,963,758	-				-0.3
4,963,925	+				-0.3
4,963,925	+				-0.1
4,963,926	-				+1.7
4,963,954	-				+0.6
4,963,992	+				+1.5
4,964,048	+		PP_4373	0.11	+1.8
4,964,049	-		PP_4373	0.11	+0.3
4,964,049	-		PP_4373	0.11	+0.9
4,964,184	-		PP_4373	0.20	+0.6
4,964,444	+		PP_4373	0.38	+0.7
4,964,444	+		PP_4373	0.38	+0.6
4,964,445	-		PP_4373	0.38	+0.8
4,964,445	-				+0.3
4,964,445	-		PP_4373	0.38	-0.1
4,964,447	+		PP_4373	0.38	+0.9
4,964,448	-		PP_4373	0.38	+0.6
4,964,448	-		PP_4373	0.38	+0.5
4,964,448	-		PP_4373	0.38	-0.2
4,964,448	-		PP_4373	0.38	+0.7
4,964,448	-		PP_4373	0.38	+0.9
4,964,448	-		PP_4373	0.38	+0.6
4,964,448	-		PP_4373	0.38	+0.2
4,964,448	-		PP_4373	0.38	+0.6
4,964,544	+		PP_4373	0.45	+1.4
4,964,562	+		PP_4373	0.46	-0.3
4,964,562	+		PP_4373	0.46	+0.8
4,964,562	+		PP_4373	0.46	+0.6
4,964,562	+		PP_4373	0.46	+2.7
4,964,563	-		PP_4373	0.46	+0.7
4,964,563	-		PP_4373	0.46	+1.4
4,964,793	-		PP_4373	0.62	+1.1
4,964,975	+		PP_4373	0.74	+1.8
4,964,975	+		PP_4373	0.74	+1.0
4,964,975	+				+1.9
4,964,976	-		PP_4373	0.74	+0.9
4,964,976	-		PP_4373	0.74	+0.7
4,965,026	+		PP_4373	0.78	+0.3
4,965,027	-		PP_4373	0.78	+0.3
4,965,027	-		PP_4373	0.78	+0.3
4,965,136	-		PP_4373	0.85	+1.5
4,965,148	-		PP_4373	0.86	+0.3
4,965,363	-				+0.7
4,965,363	-				+0.8
4,965,363	-				+0.7
4,965,363	-				+0.5
4,965,466	+				+0.9
4,965,466	+				+0.5
4,965,466	+				+0.2
4,965,466	+				+0.9
4,965,467	-				+0.5
4,965,481	-				+1.1
4,965,544	+				+0.2
4,965,544	+				+0.2
4,965,544	+				+0.2
4,965,544	+				-0.4
4,965,544	+				+0.2
4,965,545	-				-0.1
4,965,545	-				-0.4
4,965,545	-				+0.1
4,965,545	-				+1.0
4,965,546	+				+0.2
4,965,546	+				+0.1
4,965,547	-				-0.7
4,965,547	-				-2.4
4,965,547	-				-0.2
4,965,575	+		PP_4374	0.16	-0.8
4,965,703	-		PP_4374	0.60	-0.1
4,965,832	+				-1.1
4,965,833	+				+0.1
4,965,834	-				+0.0
4,965,838	+				-0.7
4,965,841	+				+0.3
4,965,841	+				+0.1
4,965,841	+				+0.8
4,965,841	+				-0.3
4,965,841	+				+0.1
4,965,842	-				-0.9
4,965,927	-		PP_4375	0.22	-0.9
4,965,961	+		PP_4375	0.31	-0.6
4,965,961	+		PP_4375	0.31	-0.4
4,965,961	+		PP_4375	0.31	-0.6
4,965,961	+		PP_4375	0.31	-0.8
4,965,961	+		PP_4375	0.31	-2.2
4,965,962	-		PP_4375	0.31	-0.4
4,965,962	-		PP_4375	0.31	-0.5
4,965,962	-		PP_4375	0.31	-0.5
4,965,967	+		PP_4375	0.32	-0.1
4,965,967	+		PP_4375	0.32	-0.3
4,966,041	+		PP_4375	0.51	-0.1
4,966,041	+		PP_4375	0.51	+0.2
4,966,041	+		PP_4375	0.51	+1.9
4,966,041	+		PP_4375	0.51	+0.3
4,966,041	+		PP_4375	0.51	-0.8
4,966,041	+		PP_4375	0.51	+0.6
4,966,041	+		PP_4375	0.51	+0.3
4,966,041	+		PP_4375	0.51	+0.5
4,966,042	-		PP_4375	0.51	+1.3
4,966,042	-		PP_4375	0.51	-0.8
4,966,042	-		PP_4375	0.51	-1.7
4,966,042	-		PP_4375	0.51	+0.7
4,966,042	-		PP_4375	0.51	+1.1
4,966,042	-		PP_4375	0.51	+0.2
4,966,042	-		PP_4375	0.51	+1.1
4,966,042	-		PP_4375	0.51	-0.1
4,966,043	+		PP_4375	0.51	-0.5
4,966,043	+		PP_4375	0.51	-0.4
4,966,044	-		PP_4375	0.52	-0.1
4,966,044	-		PP_4375	0.52	-0.6
4,966,044	-		PP_4375	0.52	+0.0
4,966,044	-		PP_4375	0.52	-0.7
4,966,044	-		PP_4375	0.52	+0.5
4,966,068	+		PP_4375	0.58	-0.5
4,966,068	+		PP_4375	0.58	-1.7
4,966,068	+		PP_4375	0.58	-0.1
4,966,068	+		PP_4375	0.58	-0.3
4,966,068	+		PP_4375	0.58	-0.4
4,966,069	-		PP_4375	0.58	+0.6
4,966,069	-		PP_4375	0.58	+0.6
4,966,069	-		PP_4375	0.58	+0.3
4,966,260	-				+0.9
4,966,270	+				+1.0
4,966,270	+				+0.9
4,966,270	+				-0.3
4,966,270	+				-1.2
4,966,270	+				-0.9
4,966,270	+				+1.3
4,966,274	+				+0.6
4,966,274	+				+1.1
4,966,274	+				-0.5
4,966,274	+				-0.4
4,966,275	-				-1.3
4,966,275	-				-0.7
4,966,278	+				+0.2
4,966,278	+				-0.2
4,966,278	+				+0.0
4,966,278	+				+0.1
4,966,278	+				+0.7
4,966,278	+				+0.2
4,966,279	-				-0.9
4,966,279	-				+0.3
4,966,279	-				-0.1
4,966,311	-				-0.7
4,966,311	-				-0.8