Strain Fitness in Pseudomonas putida KT2440 around PP_4258

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
4,840,899	-		PP_4255	0.88	+0.7
4,840,899	-		PP_4255	0.88	-0.4
4,840,899	-		PP_4255	0.88	-0.4
4,840,937	+				+0.4
4,840,994	+				+0.2
4,840,995	-				+0.8
4,840,995	-				-0.9
4,841,014	-				+0.4
4,841,105	+				+0.0
4,841,105	+				+0.7
4,841,105	+				+0.5
4,841,105	+				+0.6
4,841,105	+				+0.3
4,841,106	-				-0.3
4,841,106	-				+0.8
4,841,106	-				+2.9
4,841,106	-				+0.1
4,841,106	-				+0.6
4,841,106	-				+0.9
4,841,248	-		PP_4256	0.28	-2.9
4,841,251	+		PP_4256	0.29	+0.1
4,841,251	+		PP_4256	0.29	+0.3
4,841,251	+		PP_4256	0.29	+1.4
4,841,252	-		PP_4256	0.29	+0.0
4,841,252	-		PP_4256	0.29	-0.5
4,841,252	-		PP_4256	0.29	+0.1
4,841,252	-		PP_4256	0.29	-0.4
4,841,450	-		PP_4256	0.61	-1.7
4,841,573	-		PP_4256	0.81	-0.1
4,841,644	+				-0.3
4,841,645	-				-1.0
4,841,645	-				-0.1
4,841,900	+				+0.6
4,841,900	+				+0.4
4,841,900	+				+1.5
4,841,900	+				-0.1
4,841,901	-				-1.7
4,841,901	-				+0.3
4,841,901	-				+0.1
4,841,901	-				-0.4
4,841,905	+				+0.2
4,842,027	-		PP_4258	0.15	+0.8
4,842,093	-		PP_4258	0.22	+0.4
4,842,149	+		PP_4258	0.28	+0.8
4,842,150	-		PP_4258	0.28	+0.9
4,842,649	+		PP_4258	0.79	+0.3
4,842,649	+		PP_4258	0.79	+0.6
4,842,698	+		PP_4258	0.84	+1.5
4,842,699	-				+1.9
4,842,809	+				+0.3
4,842,809	+				-1.2
4,842,810	-				+0.4
4,842,810	-				+0.6
4,842,815	+				+0.1
4,842,816	-				+0.6
4,842,892	+				-1.4
4,842,893	-				+0.4
4,842,907	+				+0.3
4,842,919	+				+0.7
4,843,045	+				-0.1
4,843,045	+				+0.0
4,843,062	+				+0.2
4,843,062	+				+0.4
4,843,063	-				+0.3
4,843,243	+				+0.4
4,843,244	-				+0.5
4,843,312	+		PP_4259	0.11	-0.9
4,843,313	-		PP_4259	0.11	-0.4
4,843,502	-		PP_4259	0.25	+0.5
4,843,502	-		PP_4259	0.25	+0.0
4,843,783	+		PP_4259	0.44	-0.6
4,843,783	+		PP_4259	0.44	+0.3
4,843,784	-		PP_4259	0.45	-0.2
4,843,822	+		PP_4259	0.47	+0.6
4,843,822	+		PP_4259	0.47	-0.1
4,843,822	+		PP_4259	0.47	-0.1
4,843,823	-		PP_4259	0.47	-0.5
4,843,823	-		PP_4259	0.47	-0.2
4,843,823	-		PP_4259	0.47	+0.1
4,843,823	-		PP_4259	0.47	+1.0
4,843,823	-		PP_4259	0.47	-1.3
4,843,823	-		PP_4259	0.47	+0.2