Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3931 and PP_3932 are separated by 137 nucleotides PP_3932 and PP_3933 are separated by 1 nucleotides PP_3933 and PP_3934 are separated by 62 nucleotides
PP_3931: PP_3931 - putative transporter, at 4,434,874 to 4,436,703
_3931
PP_3932: PP_3932 - Diguanylate cyclase, at 4,436,841 to 4,438,265
_3932
PP_3933: PP_3933 - conserved membrane protein of unknown function, at 4,438,267 to 4,439,028
_3933
PP_3934: PP_3934 - Transcriptional regulator, LysR family, at 4,439,091 to 4,440,032
_3934
Position (kb) 4436
4437
4438
4439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4435.893 kb on + strand, within PP_3931 at 4435.894 kb on - strand, within PP_3931 at 4435.894 kb on - strand, within PP_3931 at 4435.922 kb on - strand, within PP_3931 at 4436.015 kb on + strand, within PP_3931 at 4436.036 kb on + strand, within PP_3931 at 4436.139 kb on + strand, within PP_3931 at 4436.255 kb on - strand, within PP_3931 at 4436.794 kb on + strand at 4436.812 kb on + strand at 4436.812 kb on + strand at 4436.890 kb on - strand at 4436.921 kb on + strand at 4436.921 kb on + strand at 4436.922 kb on - strand at 4436.986 kb on + strand, within PP_3932 at 4437.203 kb on - strand, within PP_3932 at 4437.363 kb on - strand, within PP_3932 at 4437.363 kb on - strand, within PP_3932 at 4437.430 kb on + strand, within PP_3932 at 4437.430 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.523 kb on - strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.567 kb on - strand, within PP_3932 at 4437.633 kb on - strand, within PP_3932 at 4437.717 kb on - strand, within PP_3932 at 4438.122 kb on - strand, within PP_3932 at 4438.200 kb on + strand at 4438.201 kb on - strand at 4438.417 kb on + strand, within PP_3933 at 4438.418 kb on - strand, within PP_3933 at 4438.425 kb on - strand, within PP_3933 at 4438.558 kb on - strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.688 kb on + strand, within PP_3933 at 4438.689 kb on - strand, within PP_3933 at 4438.834 kb on - strand, within PP_3933 at 4439.019 kb on + strand at 4439.232 kb on - strand, within PP_3934
Per-strain Table
Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL remove 4,435,893 + PP_3931 0.56 +0.1 4,435,894 - PP_3931 0.56 -1.3 4,435,894 - PP_3931 0.56 +1.7 4,435,922 - PP_3931 0.57 +0.1 4,436,015 + PP_3931 0.62 -0.3 4,436,036 + PP_3931 0.63 -0.8 4,436,139 + PP_3931 0.69 -0.5 4,436,255 - PP_3931 0.75 -0.8 4,436,794 + -0.7 4,436,812 + +0.3 4,436,812 + -0.9 4,436,890 - +1.0 4,436,921 + -0.8 4,436,921 + +1.7 4,436,922 - -0.2 4,436,986 + PP_3932 0.10 +0.2 4,437,203 - PP_3932 0.25 +0.4 4,437,363 - PP_3932 0.37 +1.9 4,437,363 - PP_3932 0.37 -1.8 4,437,430 + PP_3932 0.41 +0.7 4,437,430 + PP_3932 0.41 +0.4 4,437,522 + PP_3932 0.48 +0.4 4,437,522 + PP_3932 0.48 +0.2 4,437,522 + PP_3932 0.48 +1.3 4,437,522 + PP_3932 0.48 +0.4 4,437,523 - PP_3932 0.48 +0.6 4,437,566 + PP_3932 0.51 -0.6 4,437,566 + PP_3932 0.51 +0.0 4,437,566 + PP_3932 0.51 -0.8 4,437,567 - PP_3932 0.51 +0.3 4,437,633 - PP_3932 0.56 +0.5 4,437,717 - PP_3932 0.61 -0.1 4,438,122 - PP_3932 0.90 +0.8 4,438,200 + +0.2 4,438,201 - -0.3 4,438,417 + PP_3933 0.20 +1.6 4,438,418 - PP_3933 0.20 -0.0 4,438,425 - PP_3933 0.21 -0.1 4,438,558 - PP_3933 0.38 +0.2 4,438,586 + PP_3933 0.42 +0.2 4,438,586 + PP_3933 0.42 +0.7 4,438,586 + PP_3933 0.42 +0.7 4,438,587 - PP_3933 0.42 -1.0 4,438,587 - PP_3933 0.42 -0.1 4,438,587 - PP_3933 0.42 -0.4 4,438,688 + PP_3933 0.55 -2.3 4,438,689 - PP_3933 0.55 +0.4 4,438,834 - PP_3933 0.74 +0.5 4,439,019 + -1.1 4,439,232 - PP_3934 0.15 +1.1
Or see this region's nucleotide sequence