Strain Fitness in Pseudomonas putida KT2440 around PP_2189

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
2,494,575	-				-1.8
2,494,678	+				-0.2
2,494,679	-				+0.1
2,494,680	+				-0.1
2,494,711	+				+0.5
2,494,712	-				+0.5
2,494,722	+				-0.8
2,494,722	+				-0.2
2,494,723	-				-0.4
2,494,723	-				-0.4
2,494,723	-				-0.0
2,494,723	-				+0.2
2,494,753	+				+0.2
2,494,754	-				-0.1
2,494,791	+				+0.4
2,494,792	-				-0.2
2,494,792	-				+0.1
2,494,945	+		PP_2188	0.25	+1.1
2,494,946	-		PP_2188	0.25	+0.9
2,494,946	-		PP_2188	0.25	+0.3
2,494,946	-		PP_2188	0.25	+0.2
2,495,021	+		PP_2188	0.37	+0.2
2,495,021	+		PP_2188	0.37	-0.2
2,495,022	-		PP_2188	0.37	-0.1
2,495,130	+		PP_2188	0.55	-0.3
2,495,222	-		PP_2188	0.70	-0.0
2,495,222	-		PP_2188	0.70	-0.7
2,495,284	+		PP_2188	0.80	-1.2
2,495,284	+		PP_2188	0.80	-0.2
2,495,284	+		PP_2188	0.80	-1.3
2,495,324	+		PP_2188	0.86	+0.5
2,495,434	-				+0.5
2,495,450	+				-0.6
2,495,451	-				+1.2
2,495,517	+		PP_2189	0.20	+0.2
2,495,518	-		PP_2189	0.20	-0.2
2,495,675	+		PP_2189	0.57	+0.3
2,495,676	-		PP_2189	0.57	+1.8
2,495,676	-		PP_2189	0.57	+0.7
2,495,843	+				-1.5
2,495,843	+				-0.6
2,495,844	-				+0.4
2,495,844	-				-0.4
2,495,844	-				+0.2
2,495,848	+				+0.5
2,495,873	+				-0.5
2,495,874	-				-0.9
2,495,874	-				+0.3
2,496,081	+		PP_2190	0.76	+1.4
2,496,168	+				-0.3
2,496,168	+				+0.4
2,496,168	+				-0.4
2,496,169	-				+1.4
2,496,169	-				-0.2
2,496,255	+		PP_2191	0.19	-0.0
2,496,255	+		PP_2191	0.19	+1.4
2,496,255	+		PP_2191	0.19	+0.5
2,496,256	-		PP_2191	0.19	+0.6
2,496,256	-		PP_2191	0.19	+0.5
2,496,367	+		PP_2191	0.42	+0.2
2,496,367	+		PP_2191	0.42	-1.5
2,496,367	+		PP_2191	0.42	+0.6
2,496,368	-		PP_2191	0.42	-0.3
2,496,368	-		PP_2191	0.42	-0.3
2,496,441	+		PP_2191	0.58	-0.2
2,496,627	+				+0.1
2,496,629	+				-0.3
2,496,630	-				-0.2
2,496,813	-				+0.2
2,496,823	+				+0.2
2,496,824	-				+0.4
2,496,824	-				-0.8