Strain Fitness in Pseudomonas putida KT2440 around PP_1454

Experiment: MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL
1,659,639	+		PP_1452	0.77	-2.4
1,659,640	-		PP_1452	0.77	-0.3
1,659,697	+				+0.8
1,659,698	-		PP_1452	0.87	+0.2
1,659,791	+				+0.6
1,659,791	+				+0.8
1,659,877	+				-0.3
1,659,878	-				+0.1
1,659,904	+				+0.5
1,660,041	-		PP_1453	0.25	+0.8
1,660,058	-		PP_1453	0.28	-0.3
1,660,193	-		PP_1453	0.50	-0.5
1,660,226	+		PP_1453	0.56	-0.5
1,660,276	+		PP_1453	0.64	+0.2
1,660,277	-		PP_1453	0.64	-0.1
1,660,323	-		PP_1453	0.72	-0.4
1,660,323	-		PP_1453	0.72	+0.1
1,660,332	-		PP_1453	0.73	+0.3
1,660,349	+		PP_1453	0.76	-0.4
1,660,349	+		PP_1453	0.76	+0.2
1,660,349	+		PP_1453	0.76	+0.5
1,660,349	+		PP_1453	0.76	-0.1
1,660,350	-		PP_1453	0.77	-0.9
1,660,356	+		PP_1453	0.78	+0.3
1,660,356	+		PP_1453	0.78	+0.2
1,660,356	+		PP_1453	0.78	+0.6
1,660,357	-				+0.8
1,660,357	-		PP_1453	0.78	+0.5
1,660,357	-		PP_1453	0.78	+1.8
1,660,368	+		PP_1453	0.80	+0.3
1,660,369	-		PP_1453	0.80	+0.1
1,660,374	+		PP_1453	0.81	-2.8
1,660,383	+		PP_1453	0.82	+0.1
1,660,383	+		PP_1453	0.82	-0.9
1,660,383	+		PP_1453	0.82	-0.3
1,660,383	+		PP_1453	0.82	+0.3
1,660,383	+		PP_1453	0.82	+1.1
1,660,383	+		PP_1453	0.82	-0.5
1,660,384	-		PP_1453	0.82	+0.6
1,660,384	-		PP_1453	0.82	+0.5
1,660,384	-		PP_1453	0.82	+0.9
1,660,498	+				-0.1
1,660,669	-		PP_1454	0.26	-0.4
1,660,953	-		PP_1454	0.80	-0.1
1,661,005	+		PP_1454	0.90	+1.3
1,661,005	+		PP_1454	0.90	+0.3
1,661,005	+		PP_1454	0.90	+1.8
1,661,006	-				+0.2
1,661,006	-				-0.1
1,661,006	-				-0.1
1,661,006	-				+0.4
1,661,140	+		PP_1455	0.50	-0.6
1,661,223	+		PP_1455	0.87	+0.3
1,661,224	-		PP_1455	0.88	-0.5
1,661,224	-		PP_1455	0.88	-0.4
1,661,263	+				+0.1
1,661,263	+				+0.2
1,661,264	-				-0.5
1,661,335	+				+0.2
1,661,335	+				+0.7
1,661,336	-				+0.8
1,661,347	+				+0.6
1,661,347	+				+0.1
1,661,347	+				-3.0
1,661,361	-				-0.2
1,661,361	-				-1.4
1,661,374	+				+0.8
1,661,374	+				+1.8
1,661,375	-				+0.8
1,661,375	-				-0.2
1,661,375	-				-0.4
1,661,512	+		PP_1456	0.39	+0.3
1,661,512	+		PP_1456	0.39	-1.3
1,661,512	+		PP_1456	0.39	-0.3
1,661,512	+		PP_1456	0.39	+0.2
1,661,513	-		PP_1456	0.39	+0.0
1,661,513	-		PP_1456	0.39	+0.3
1,661,513	-		PP_1456	0.39	-0.3
1,661,513	-		PP_1456	0.39	+1.8
1,661,658	+		PP_1456	0.70	-0.3
1,661,658	+		PP_1456	0.70	-0.1
1,661,659	-		PP_1456	0.71	-0.4
1,661,802	+				-0.5
1,661,802	+				-0.3
1,661,803	-				-3.9
1,661,803	-				-0.2
1,661,916	+				+1.4
1,661,917	-				+1.8
1,661,985	+				-0.9
1,661,985	+				+0.1
1,661,985	+				+1.2
1,661,985	+				-0.5
1,662,002	+		PP_1457	0.11	-0.1
1,662,002	+		PP_1457	0.11	+0.4