Experiment: 2-Methylbutanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0665 and PP_0666 are separated by 16 nucleotides PP_0666 and PP_0667 are separated by 170 nucleotides PP_0667 and PP_0668 overlap by 4 nucleotides
PP_0665: PP_0665 - putative glyceraldehyde-3-phosphate dehydrogenase, at 773,394 to 774,812
_0665
PP_0666: PP_0666 - conserved protein of unknown function, at 774,829 to 775,191
_0666
PP_0667: PP_0667 - RNA polymerase sigma-70 factor, ECF subfamily, at 775,362 to 775,898
_0667
PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860
_0668
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 773.832 kb on - strand, within PP_0665 at 773.956 kb on - strand, within PP_0665 at 773.996 kb on - strand, within PP_0665 at 774.253 kb on + strand, within PP_0665 at 774.254 kb on - strand, within PP_0665 at 774.268 kb on - strand, within PP_0665 at 774.268 kb on - strand, within PP_0665 at 774.456 kb on + strand, within PP_0665 at 774.589 kb on - strand, within PP_0665 at 774.589 kb on - strand, within PP_0665 at 774.650 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.667 kb on + strand, within PP_0665 at 774.668 kb on - strand, within PP_0665 at 774.668 kb on - strand, within PP_0665 at 774.726 kb on + strand at 774.726 kb on + strand at 774.726 kb on + strand at 774.727 kb on - strand at 774.727 kb on - strand at 774.727 kb on - strand at 774.763 kb on - strand at 774.822 kb on + strand at 774.823 kb on - strand at 774.823 kb on - strand at 774.823 kb on - strand at 775.066 kb on + strand, within PP_0666 at 775.066 kb on + strand, within PP_0666 at 775.066 kb on + strand, within PP_0666 at 775.067 kb on - strand, within PP_0666 at 775.067 kb on - strand, within PP_0666 at 775.136 kb on - strand, within PP_0666 at 775.225 kb on + strand at 775.413 kb on + strand at 775.414 kb on - strand at 775.498 kb on + strand, within PP_0667 at 775.557 kb on + strand, within PP_0667 at 775.558 kb on - strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.568 kb on + strand, within PP_0667 at 775.569 kb on - strand, within PP_0667 at 775.727 kb on + strand, within PP_0667 at 775.727 kb on + strand, within PP_0667 at 775.728 kb on - strand, within PP_0667 at 775.833 kb on + strand, within PP_0667 at 775.834 kb on - strand, within PP_0667 at 775.847 kb on + strand at 775.847 kb on + strand at 775.847 kb on + strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.848 kb on - strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.851 kb on + strand at 775.852 kb on - strand at 775.852 kb on - strand at 775.852 kb on - strand at 776.043 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Methylbutanoic (C) remove 773,832 - PP_0665 0.31 -1.1 773,956 - PP_0665 0.40 -1.8 773,996 - PP_0665 0.42 -0.7 774,253 + PP_0665 0.61 +2.2 774,254 - PP_0665 0.61 +0.2 774,268 - PP_0665 0.62 -0.0 774,268 - PP_0665 0.62 -0.8 774,456 + PP_0665 0.75 -1.3 774,589 - PP_0665 0.84 +0.1 774,589 - PP_0665 0.84 +2.4 774,650 + PP_0665 0.89 +0.4 774,667 + PP_0665 0.90 +1.3 774,667 + PP_0665 0.90 -2.7 774,667 + PP_0665 0.90 -0.0 774,667 + PP_0665 0.90 -0.9 774,668 - PP_0665 0.90 -0.1 774,668 - PP_0665 0.90 -0.0 774,726 + +0.4 774,726 + -0.1 774,726 + -0.5 774,727 - +0.9 774,727 - -0.3 774,727 - +0.6 774,763 - -0.5 774,822 + -1.9 774,823 - -1.8 774,823 - -2.7 774,823 - -0.3 775,066 + PP_0666 0.65 -1.1 775,066 + PP_0666 0.65 +2.7 775,066 + PP_0666 0.65 +1.6 775,067 - PP_0666 0.66 +0.7 775,067 - PP_0666 0.66 -0.0 775,136 - PP_0666 0.85 +0.6 775,225 + -2.2 775,413 + -0.1 775,414 - +0.1 775,498 + PP_0667 0.25 -0.3 775,557 + PP_0667 0.36 +0.0 775,558 - PP_0667 0.36 -2.0 775,568 + PP_0667 0.38 +0.4 775,568 + PP_0667 0.38 -0.3 775,568 + PP_0667 0.38 +2.5 775,568 + PP_0667 0.38 -1.3 775,568 + PP_0667 0.38 +0.3 775,568 + PP_0667 0.38 +0.4 775,569 - PP_0667 0.39 +0.1 775,727 + PP_0667 0.68 -0.3 775,727 + PP_0667 0.68 +0.1 775,728 - PP_0667 0.68 -0.7 775,833 + PP_0667 0.88 -0.4 775,834 - PP_0667 0.88 -0.8 775,847 + +0.5 775,847 + -0.0 775,847 + -0.4 775,848 - +0.9 775,848 - -2.3 775,848 - -0.2 775,848 - -0.6 775,848 - -2.2 775,848 - -2.2 775,851 + -1.3 775,851 + -0.7 775,851 + -0.0 775,851 + -1.3 775,852 - -0.7 775,852 - +1.0 775,852 - +0.3 776,043 - PP_0668 0.15 +2.2 776,047 - PP_0668 0.16 +0.3 776,047 - PP_0668 0.16 +0.0 776,047 - PP_0668 0.16 -1.3
Or see this region's nucleotide sequence