Experiment: 2-Methylbutanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3821 and PP_3822 are separated by 236 nucleotides PP_3822 and PP_3823 overlap by 4 nucleotides PP_3823 and PP_3824 are separated by 74 nucleotides
PP_3821: PP_3821 - UTP-glucose-1-phosphate uridylyltransferase, at 4,349,109 to 4,349,948
_3821
PP_3822: PP_3822 - Cytochrome c family protein, at 4,350,185 to 4,351,099
_3822
PP_3823: PP_3823 - Cytochrome c-type protein, at 4,351,096 to 4,351,749
_3823
PP_3824: PP_3824 - conserved exported protein of unknown function, at 4,351,824 to 4,352,204
_3824
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4349.210 kb on + strand, within PP_3821 at 4349.211 kb on - strand, within PP_3821 at 4349.211 kb on - strand, within PP_3821 at 4349.211 kb on - strand, within PP_3821 at 4349.211 kb on - strand, within PP_3821 at 4349.211 kb on - strand, within PP_3821 at 4349.212 kb on + strand, within PP_3821 at 4349.212 kb on + strand, within PP_3821 at 4349.212 kb on + strand, within PP_3821 at 4349.213 kb on - strand, within PP_3821 at 4349.213 kb on - strand, within PP_3821 at 4349.213 kb on - strand, within PP_3821 at 4349.265 kb on + strand, within PP_3821 at 4349.266 kb on - strand, within PP_3821 at 4349.266 kb on - strand, within PP_3821 at 4349.266 kb on - strand, within PP_3821 at 4349.329 kb on + strand, within PP_3821 at 4349.329 kb on + strand, within PP_3821 at 4349.440 kb on + strand, within PP_3821 at 4349.440 kb on + strand, within PP_3821 at 4349.440 kb on + strand, within PP_3821 at 4349.441 kb on - strand, within PP_3821 at 4349.441 kb on - strand, within PP_3821 at 4349.441 kb on - strand, within PP_3821 at 4349.441 kb on - strand, within PP_3821 at 4349.441 kb on - strand, within PP_3821 at 4349.495 kb on - strand, within PP_3821 at 4349.638 kb on + strand, within PP_3821 at 4349.653 kb on + strand, within PP_3821 at 4349.654 kb on - strand, within PP_3821 at 4349.688 kb on - strand, within PP_3821 at 4349.699 kb on - strand, within PP_3821 at 4349.699 kb on - strand, within PP_3821 at 4349.740 kb on + strand, within PP_3821 at 4349.740 kb on + strand, within PP_3821 at 4349.740 kb on + strand, within PP_3821 at 4349.741 kb on - strand, within PP_3821 at 4349.837 kb on - strand, within PP_3821 at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.948 kb on + strand at 4349.949 kb on - strand at 4349.949 kb on - strand at 4349.949 kb on - strand at 4349.949 kb on - strand at 4349.949 kb on - strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.950 kb on + strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.951 kb on - strand at 4349.958 kb on + strand at 4349.958 kb on + strand at 4349.959 kb on - strand at 4349.969 kb on - strand at 4349.969 kb on - strand at 4349.993 kb on + strand at 4349.993 kb on + strand at 4349.994 kb on - strand at 4350.013 kb on + strand at 4350.013 kb on + strand at 4350.013 kb on + strand at 4350.013 kb on + strand at 4350.013 kb on + strand at 4350.013 kb on + strand at 4350.014 kb on - strand at 4350.014 kb on - strand at 4350.045 kb on + strand at 4350.045 kb on + strand at 4350.045 kb on + strand at 4350.046 kb on - strand at 4350.046 kb on - strand at 4350.046 kb on - strand at 4350.046 kb on - strand at 4350.051 kb on + strand at 4350.052 kb on - strand at 4350.061 kb on + strand at 4350.061 kb on + strand at 4350.061 kb on + strand at 4350.061 kb on + strand at 4350.061 kb on + strand at 4350.062 kb on - strand at 4350.066 kb on - strand at 4350.081 kb on + strand at 4350.081 kb on + strand at 4350.086 kb on - strand at 4350.086 kb on - strand at 4350.096 kb on + strand at 4350.097 kb on - strand at 4350.097 kb on - strand at 4350.097 kb on - strand at 4350.097 kb on - strand at 4350.097 kb on - strand at 4350.191 kb on - strand at 4350.229 kb on + strand at 4350.229 kb on + strand at 4350.229 kb on + strand at 4350.230 kb on - strand at 4350.234 kb on + strand at 4350.234 kb on + strand at 4350.234 kb on + strand at 4350.293 kb on + strand, within PP_3822 at 4350.293 kb on + strand, within PP_3822 at 4350.397 kb on - strand, within PP_3822 at 4350.397 kb on - strand, within PP_3822 at 4350.418 kb on + strand, within PP_3822 at 4350.450 kb on + strand, within PP_3822 at 4350.450 kb on + strand, within PP_3822 at 4350.451 kb on - strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.479 kb on + strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.480 kb on - strand, within PP_3822 at 4350.483 kb on + strand, within PP_3822 at 4350.483 kb on + strand, within PP_3822 at 4350.483 kb on + strand, within PP_3822 at 4350.484 kb on - strand, within PP_3822 at 4350.484 kb on - strand, within PP_3822 at 4350.655 kb on - strand, within PP_3822 at 4350.655 kb on - strand, within PP_3822 at 4350.660 kb on + strand, within PP_3822 at 4350.660 kb on + strand, within PP_3822 at 4350.661 kb on - strand, within PP_3822 at 4350.661 kb on - strand, within PP_3822 at 4350.789 kb on + strand, within PP_3822 at 4350.799 kb on - strand, within PP_3822 at 4350.853 kb on + strand, within PP_3822 at 4350.854 kb on - strand, within PP_3822 at 4350.854 kb on - strand, within PP_3822 at 4350.950 kb on - strand, within PP_3822 at 4351.250 kb on + strand, within PP_3823 at 4351.250 kb on + strand, within PP_3823 at 4351.250 kb on + strand, within PP_3823 at 4351.356 kb on - strand, within PP_3823 at 4351.439 kb on + strand, within PP_3823 at 4351.439 kb on + strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.440 kb on - strand, within PP_3823 at 4351.444 kb on - strand, within PP_3823 at 4351.547 kb on + strand, within PP_3823 at 4351.547 kb on + strand, within PP_3823 at 4351.887 kb on - strand, within PP_3824 at 4352.055 kb on + strand, within PP_3824 at 4352.055 kb on + strand, within PP_3824 at 4352.056 kb on - strand, within PP_3824
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Methylbutanoic (C) remove 4,349,210 + PP_3821 0.12 -3.5 4,349,211 - PP_3821 0.12 -6.5 4,349,211 - PP_3821 0.12 -3.1 4,349,211 - PP_3821 0.12 -4.5 4,349,211 - PP_3821 0.12 -6.6 4,349,211 - PP_3821 0.12 -3.0 4,349,212 + PP_3821 0.12 -4.4 4,349,212 + PP_3821 0.12 -4.1 4,349,212 + PP_3821 0.12 -6.4 4,349,213 - PP_3821 0.12 -2.9 4,349,213 - PP_3821 0.12 -5.0 4,349,213 - PP_3821 0.12 +1.9 4,349,265 + PP_3821 0.19 -3.1 4,349,266 - PP_3821 0.19 -0.6 4,349,266 - PP_3821 0.19 -2.3 4,349,266 - PP_3821 0.19 -4.1 4,349,329 + PP_3821 0.26 -4.3 4,349,329 + PP_3821 0.26 -3.9 4,349,440 + PP_3821 0.39 -2.9 4,349,440 + PP_3821 0.39 -3.1 4,349,440 + PP_3821 0.39 -0.4 4,349,441 - PP_3821 0.40 -3.5 4,349,441 - PP_3821 0.40 -2.1 4,349,441 - PP_3821 0.40 -5.5 4,349,441 - PP_3821 0.40 -2.7 4,349,441 - PP_3821 0.40 -2.8 4,349,495 - PP_3821 0.46 -0.1 4,349,638 + PP_3821 0.63 -3.5 4,349,653 + PP_3821 0.65 -2.8 4,349,654 - PP_3821 0.65 -4.8 4,349,688 - PP_3821 0.69 -1.4 4,349,699 - PP_3821 0.70 -4.5 4,349,699 - PP_3821 0.70 -2.0 4,349,740 + PP_3821 0.75 -4.1 4,349,740 + PP_3821 0.75 +1.9 4,349,740 + PP_3821 0.75 -2.3 4,349,741 - PP_3821 0.75 -1.4 4,349,837 - PP_3821 0.87 -3.8 4,349,948 + -4.0 4,349,948 + -3.8 4,349,948 + -2.1 4,349,948 + -3.0 4,349,948 + -4.1 4,349,948 + -3.2 4,349,948 + -2.4 4,349,948 + -6.3 4,349,948 + -3.4 4,349,948 + +1.9 4,349,948 + -2.1 4,349,949 - -1.6 4,349,949 - -1.8 4,349,949 - -2.2 4,349,949 - +0.2 4,349,949 - -1.9 4,349,950 + -4.3 4,349,950 + -5.7 4,349,950 + -6.2 4,349,950 + -4.3 4,349,950 + -2.1 4,349,950 + -0.9 4,349,950 + -2.2 4,349,950 + -4.1 4,349,951 - -0.8 4,349,951 - -1.7 4,349,951 - -1.9 4,349,951 - -2.4 4,349,951 - -3.2 4,349,951 - -2.3 4,349,951 - -1.8 4,349,958 + -1.8 4,349,958 + -3.0 4,349,959 - +0.2 4,349,969 - +0.9 4,349,969 - -0.9 4,349,993 + -1.6 4,349,993 + -1.4 4,349,994 - -0.3 4,350,013 + -1.9 4,350,013 + +1.9 4,350,013 + -2.8 4,350,013 + -3.4 4,350,013 + -3.7 4,350,013 + -2.3 4,350,014 - -0.1 4,350,014 - +0.6 4,350,045 + +1.5 4,350,045 + -1.2 4,350,045 + +0.0 4,350,046 - -0.6 4,350,046 - +0.4 4,350,046 - -0.4 4,350,046 - -0.6 4,350,051 + +0.2 4,350,052 - +0.4 4,350,061 + -1.3 4,350,061 + +1.4 4,350,061 + -0.3 4,350,061 + +0.5 4,350,061 + +0.8 4,350,062 - +1.4 4,350,066 - -1.8 4,350,081 + +0.7 4,350,081 + +0.3 4,350,086 - -0.1 4,350,086 - -0.1 4,350,096 + +1.0 4,350,097 - +0.4 4,350,097 - -0.9 4,350,097 - -0.2 4,350,097 - -0.5 4,350,097 - +0.1 4,350,191 - +0.3 4,350,229 + +0.6 4,350,229 + +0.4 4,350,229 + +0.9 4,350,230 - +0.6 4,350,234 + +0.3 4,350,234 + -0.2 4,350,234 + +0.3 4,350,293 + PP_3822 0.12 +0.6 4,350,293 + PP_3822 0.12 -0.2 4,350,397 - PP_3822 0.23 +0.7 4,350,397 - PP_3822 0.23 -0.4 4,350,418 + PP_3822 0.25 -0.4 4,350,450 + PP_3822 0.29 +1.4 4,350,450 + PP_3822 0.29 -0.9 4,350,451 - PP_3822 0.29 +0.4 4,350,479 + PP_3822 0.32 +0.2 4,350,479 + PP_3822 0.32 -1.2 4,350,479 + +1.9 4,350,479 + PP_3822 0.32 +0.1 4,350,479 + PP_3822 0.32 -0.6 4,350,479 + PP_3822 0.32 +0.5 4,350,479 + PP_3822 0.32 -0.2 4,350,479 + PP_3822 0.32 +1.0 4,350,480 - PP_3822 0.32 -1.8 4,350,480 - PP_3822 0.32 -0.6 4,350,480 - PP_3822 0.32 -0.8 4,350,480 - PP_3822 0.32 +0.2 4,350,480 - PP_3822 0.32 -0.7 4,350,480 - PP_3822 0.32 +0.1 4,350,480 - PP_3822 0.32 -0.0 4,350,483 + PP_3822 0.33 -0.6 4,350,483 + PP_3822 0.33 +0.1 4,350,483 + PP_3822 0.33 +0.1 4,350,484 - PP_3822 0.33 -1.1 4,350,484 - PP_3822 0.33 +1.9 4,350,655 - PP_3822 0.51 -0.3 4,350,655 - PP_3822 0.51 +0.9 4,350,660 + PP_3822 0.52 +0.8 4,350,660 + PP_3822 0.52 -0.9 4,350,661 - PP_3822 0.52 -3.0 4,350,661 - PP_3822 0.52 -0.3 4,350,789 + PP_3822 0.66 +0.6 4,350,799 - PP_3822 0.67 -2.1 4,350,853 + PP_3822 0.73 +1.7 4,350,854 - PP_3822 0.73 -0.8 4,350,854 - PP_3822 0.73 -0.3 4,350,950 - PP_3822 0.84 -0.4 4,351,250 + PP_3823 0.24 -1.1 4,351,250 + PP_3823 0.24 +1.7 4,351,250 + PP_3823 0.24 -2.1 4,351,356 - PP_3823 0.40 +0.1 4,351,439 + PP_3823 0.52 +0.4 4,351,439 + PP_3823 0.52 -1.3 4,351,440 - PP_3823 0.53 +1.0 4,351,440 - PP_3823 0.53 -0.6 4,351,440 - PP_3823 0.53 +0.8 4,351,444 - PP_3823 0.53 +0.0 4,351,547 + PP_3823 0.69 -0.6 4,351,547 + PP_3823 0.69 -1.1 4,351,887 - PP_3824 0.17 +0.6 4,352,055 + PP_3824 0.61 -0.0 4,352,055 + PP_3824 0.61 +1.0 4,352,056 - PP_3824 0.61 +0.5
Or see this region's nucleotide sequence