Strain Fitness in Pseudomonas putida KT2440 around PP_4704

Experiment: DL-3-Hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4702 and PP_4703 are separated by 41 nucleotidesPP_4703 and PP_4704 are separated by 78 nucleotidesPP_4704 and PP_4705 are separated by 81 nucleotidesPP_4705 and PP_4706 are separated by 60 nucleotidesPP_4706 and PP_4707 are separated by 75 nucleotides PP_4702: PP_4702 - acetyl-CoA synthetase, at 5,344,603 to 5,346,537 _4702 PP_4703: PP_4703 - conserved protein of unknown function, at 5,346,579 to 5,347,448 _4703 PP_4704: PP_4704 - conserved protein of unknown function, at 5,347,527 to 5,350,463 _4704 PP_4705: PP_4705 - Glyoxalase, at 5,350,545 to 5,350,958 _4705 PP_4706: PP_4706 - conserved protein of unknown function, at 5,351,019 to 5,351,321 _4706 PP_4707: PP_4707 - OsmY-related protein, at 5,351,397 to 5,351,747 _4707 Position (kb) 5347 5348 5349 5350 5351Strain fitness (log2 ratio) -2 -1 0 1 2at 5346.565 kb on + strandat 5346.695 kb on + strand, within PP_4703at 5346.696 kb on - strand, within PP_4703at 5346.696 kb on - strand, within PP_4703at 5346.698 kb on + strand, within PP_4703at 5346.698 kb on + strand, within PP_4703at 5346.698 kb on + strandat 5346.698 kb on + strand, within PP_4703at 5346.699 kb on - strand, within PP_4703at 5346.917 kb on + strand, within PP_4703at 5346.918 kb on - strand, within PP_4703at 5346.961 kb on - strand, within PP_4703at 5347.000 kb on + strand, within PP_4703at 5347.001 kb on - strand, within PP_4703at 5347.077 kb on + strand, within PP_4703at 5347.077 kb on + strand, within PP_4703at 5347.078 kb on - strand, within PP_4703at 5347.078 kb on - strand, within PP_4703at 5347.080 kb on + strand, within PP_4703at 5347.080 kb on + strand, within PP_4703at 5347.080 kb on + strand, within PP_4703at 5347.080 kb on + strand, within PP_4703at 5347.081 kb on - strand, within PP_4703at 5347.155 kb on + strand, within PP_4703at 5347.155 kb on + strand, within PP_4703at 5347.156 kb on - strand, within PP_4703at 5347.156 kb on - strand, within PP_4703at 5347.169 kb on - strand, within PP_4703at 5347.169 kb on - strand, within PP_4703at 5347.480 kb on - strandat 5347.489 kb on + strandat 5347.489 kb on + strandat 5347.490 kb on - strandat 5347.490 kb on - strandat 5347.509 kb on - strandat 5347.530 kb on + strandat 5347.530 kb on + strandat 5347.530 kb on + strandat 5347.530 kb on + strandat 5347.531 kb on - strandat 5347.531 kb on - strandat 5347.531 kb on - strandat 5347.531 kb on - strandat 5347.531 kb on - strandat 5347.531 kb on - strandat 5347.574 kb on - strandat 5347.574 kb on - strandat 5347.581 kb on + strandat 5347.581 kb on + strandat 5347.581 kb on + strandat 5347.582 kb on - strandat 5347.582 kb on - strandat 5347.582 kb on - strandat 5347.583 kb on + strandat 5347.651 kb on - strandat 5347.770 kb on + strandat 5347.771 kb on - strandat 5347.771 kb on - strandat 5347.956 kb on - strand, within PP_4704at 5347.956 kb on - strand, within PP_4704at 5348.032 kb on - strand, within PP_4704at 5348.217 kb on + strand, within PP_4704at 5348.271 kb on - strand, within PP_4704at 5348.271 kb on - strand, within PP_4704at 5348.277 kb on + strand, within PP_4704at 5348.277 kb on + strand, within PP_4704at 5348.277 kb on + strand, within PP_4704at 5348.278 kb on - strand, within PP_4704at 5348.278 kb on - strand, within PP_4704at 5348.579 kb on + strand, within PP_4704at 5348.580 kb on - strand, within PP_4704at 5348.580 kb on - strand, within PP_4704at 5348.655 kb on + strand, within PP_4704at 5348.655 kb on + strand, within PP_4704at 5348.656 kb on - strand, within PP_4704at 5348.656 kb on - strand, within PP_4704at 5348.892 kb on + strand, within PP_4704at 5349.087 kb on + strand, within PP_4704at 5349.087 kb on + strand, within PP_4704at 5349.088 kb on - strand, within PP_4704at 5349.088 kb on - strand, within PP_4704at 5349.088 kb on - strand, within PP_4704at 5349.138 kb on + strand, within PP_4704at 5349.138 kb on + strand, within PP_4704at 5349.138 kb on + strand, within PP_4704at 5349.139 kb on - strand, within PP_4704at 5349.139 kb on - strand, within PP_4704at 5349.139 kb on - strand, within PP_4704at 5349.139 kb on - strand, within PP_4704at 5349.428 kb on - strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.600 kb on + strand, within PP_4704at 5349.601 kb on - strand, within PP_4704at 5349.601 kb on - strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.640 kb on + strand, within PP_4704at 5349.641 kb on - strand, within PP_4704at 5349.641 kb on - strand, within PP_4704at 5349.643 kb on + strand, within PP_4704at 5349.643 kb on + strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.644 kb on - strand, within PP_4704at 5349.887 kb on + strand, within PP_4704at 5349.888 kb on - strand, within PP_4704at 5350.092 kb on + strand, within PP_4704at 5350.093 kb on - strand, within PP_4704at 5350.188 kb on + strandat 5350.189 kb on - strandat 5350.189 kb on - strandat 5350.347 kb on + strandat 5350.347 kb on + strandat 5350.348 kb on - strandat 5350.386 kb on + strandat 5350.387 kb on - strandat 5350.387 kb on - strandat 5350.398 kb on - strandat 5350.462 kb on - strandat 5350.501 kb on + strandat 5350.502 kb on - strandat 5350.579 kb on + strandat 5350.579 kb on + strandat 5350.687 kb on + strand, within PP_4705at 5350.688 kb on - strand, within PP_4705at 5350.693 kb on + strand, within PP_4705at 5350.694 kb on - strand, within PP_4705at 5350.735 kb on + strand, within PP_4705at 5350.813 kb on + strand, within PP_4705at 5350.814 kb on - strand, within PP_4705at 5350.867 kb on + strand, within PP_4705at 5351.024 kb on + strandat 5351.025 kb on - strandat 5351.035 kb on + strandat 5351.172 kb on + strand, within PP_4706at 5351.172 kb on + strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.173 kb on - strand, within PP_4706at 5351.179 kb on - strand, within PP_4706at 5351.205 kb on + strand, within PP_4706at 5351.205 kb on + strand, within PP_4706at 5351.206 kb on - strand, within PP_4706at 5351.206 kb on - strand, within PP_4706at 5351.316 kb on + strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.317 kb on - strandat 5351.398 kb on + strandat 5351.424 kb on + strandat 5351.425 kb on - strandat 5351.425 kb on - strandat 5351.425 kb on - strandat 5351.454 kb on - strand, within PP_4707at 5351.454 kb on - strand, within PP_4707

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DL-3-Hydroxybutyric (C)
remove
5,346,565 + -0.2
5,346,695 + PP_4703 0.13 +0.6
5,346,696 - PP_4703 0.13 +0.4
5,346,696 - PP_4703 0.13 -0.5
5,346,698 + PP_4703 0.14 +0.1
5,346,698 + PP_4703 0.14 +1.4
5,346,698 + +0.5
5,346,698 + PP_4703 0.14 -1.6
5,346,699 - PP_4703 0.14 -1.2
5,346,917 + PP_4703 0.39 -0.4
5,346,918 - PP_4703 0.39 -0.4
5,346,961 - PP_4703 0.44 -0.9
5,347,000 + PP_4703 0.48 +0.1
5,347,001 - PP_4703 0.49 -0.7
5,347,077 + PP_4703 0.57 +1.5
5,347,077 + PP_4703 0.57 +1.2
5,347,078 - PP_4703 0.57 +0.1
5,347,078 - PP_4703 0.57 +0.1
5,347,080 + PP_4703 0.58 -0.5
5,347,080 + PP_4703 0.58 -0.0
5,347,080 + PP_4703 0.58 -0.9
5,347,080 + PP_4703 0.58 -0.3
5,347,081 - PP_4703 0.58 -0.5
5,347,155 + PP_4703 0.66 -0.6
5,347,155 + PP_4703 0.66 +0.5
5,347,156 - PP_4703 0.66 -0.5
5,347,156 - PP_4703 0.66 +0.3
5,347,169 - PP_4703 0.68 +0.6
5,347,169 - PP_4703 0.68 +0.4
5,347,480 - -1.5
5,347,489 + -0.1
5,347,489 + +0.6
5,347,490 - -0.5
5,347,490 - -1.6
5,347,509 - -0.2
5,347,530 + +0.3
5,347,530 + -0.6
5,347,530 + +1.5
5,347,530 + -2.5
5,347,531 - -1.5
5,347,531 - +0.3
5,347,531 - -1.1
5,347,531 - +0.4
5,347,531 - -0.6
5,347,531 - +0.2
5,347,574 - -0.2
5,347,574 - -1.2
5,347,581 + -0.7
5,347,581 + -2.3
5,347,581 + -0.6
5,347,582 - -0.8
5,347,582 - +1.1
5,347,582 - +0.7
5,347,583 + -0.7
5,347,651 - -0.6
5,347,770 + -0.1
5,347,771 - +1.1
5,347,771 - -0.1
5,347,956 - PP_4704 0.15 -1.2
5,347,956 - PP_4704 0.15 -0.9
5,348,032 - PP_4704 0.17 -1.1
5,348,217 + PP_4704 0.23 +1.3
5,348,271 - PP_4704 0.25 -2.0
5,348,271 - PP_4704 0.25 +0.0
5,348,277 + PP_4704 0.26 -0.6
5,348,277 + PP_4704 0.26 +1.1
5,348,277 + PP_4704 0.26 +0.8
5,348,278 - PP_4704 0.26 -0.2
5,348,278 - PP_4704 0.26 -0.1
5,348,579 + PP_4704 0.36 +0.8
5,348,580 - PP_4704 0.36 -1.7
5,348,580 - PP_4704 0.36 +0.3
5,348,655 + PP_4704 0.38 -0.5
5,348,655 + PP_4704 0.38 -0.7
5,348,656 - PP_4704 0.38 -0.5
5,348,656 - PP_4704 0.38 +0.5
5,348,892 + PP_4704 0.46 -0.4
5,349,087 + PP_4704 0.53 +0.0
5,349,087 + PP_4704 0.53 -2.1
5,349,088 - PP_4704 0.53 -0.7
5,349,088 - PP_4704 0.53 +0.8
5,349,088 - PP_4704 0.53 -0.0
5,349,138 + PP_4704 0.55 -1.9
5,349,138 + PP_4704 0.55 -0.2
5,349,138 + PP_4704 0.55 -0.7
5,349,139 - PP_4704 0.55 -1.1
5,349,139 - PP_4704 0.55 -0.5
5,349,139 - PP_4704 0.55 -0.5
5,349,139 - PP_4704 0.55 -1.2
5,349,428 - PP_4704 0.65 +0.5
5,349,600 + PP_4704 0.71 -0.1
5,349,600 + PP_4704 0.71 -0.5
5,349,600 + PP_4704 0.71 +0.2
5,349,600 + PP_4704 0.71 +2.1
5,349,601 - PP_4704 0.71 -0.2
5,349,601 - PP_4704 0.71 -1.5
5,349,640 + PP_4704 0.72 -0.3
5,349,640 + PP_4704 0.72 -0.8
5,349,640 + PP_4704 0.72 -0.8
5,349,641 - PP_4704 0.72 -0.8
5,349,641 - PP_4704 0.72 -0.5
5,349,643 + PP_4704 0.72 -1.9
5,349,643 + PP_4704 0.72 -1.2
5,349,644 - PP_4704 0.72 +0.0
5,349,644 - PP_4704 0.72 -1.1
5,349,644 - PP_4704 0.72 -0.9
5,349,644 - PP_4704 0.72 -0.5
5,349,887 + PP_4704 0.80 +0.3
5,349,888 - PP_4704 0.80 -0.8
5,350,092 + PP_4704 0.87 -0.4
5,350,093 - PP_4704 0.87 -1.1
5,350,188 + +0.7
5,350,189 - -0.6
5,350,189 - -1.9
5,350,347 + +0.0
5,350,347 + -0.6
5,350,348 - +1.1
5,350,386 + -1.0
5,350,387 - -1.5
5,350,387 - -0.8
5,350,398 - -1.3
5,350,462 - +0.1
5,350,501 + +0.3
5,350,502 - +0.3
5,350,579 + +0.5
5,350,579 + -0.2
5,350,687 + PP_4705 0.34 -0.3
5,350,688 - PP_4705 0.35 -0.1
5,350,693 + PP_4705 0.36 +0.5
5,350,694 - PP_4705 0.36 +0.0
5,350,735 + PP_4705 0.46 -0.3
5,350,813 + PP_4705 0.65 -0.9
5,350,814 - PP_4705 0.65 -1.8
5,350,867 + PP_4705 0.78 +0.5
5,351,024 + +1.2
5,351,025 - +0.4
5,351,035 + +0.3
5,351,172 + PP_4706 0.50 +0.1
5,351,172 + PP_4706 0.50 -1.5
5,351,173 - PP_4706 0.51 -0.4
5,351,173 - PP_4706 0.51 -0.4
5,351,173 - PP_4706 0.51 +0.5
5,351,179 - PP_4706 0.53 -0.4
5,351,205 + PP_4706 0.61 +2.1
5,351,205 + PP_4706 0.61 -0.0
5,351,206 - PP_4706 0.62 -0.1
5,351,206 - PP_4706 0.62 +0.0
5,351,316 + -0.2
5,351,317 - +0.1
5,351,317 - +0.1
5,351,317 - +0.9
5,351,317 - -0.5
5,351,398 + +0.5
5,351,424 + +0.6
5,351,425 - +0.2
5,351,425 - -0.3
5,351,425 - -1.8
5,351,454 - PP_4707 0.16 +0.7
5,351,454 - PP_4707 0.16 -0.1

Or see this region's nucleotide sequence