Strain Fitness in Pseudomonas putida KT2440 around PP_1433

Experiment: DL-3-Hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1432 and PP_1433 are separated by 163 nucleotidesPP_1433 and PP_1434 overlap by 14 nucleotides PP_1432: PP_1432 - signal peptidase I, at 1,633,052 to 1,633,906 _1432 PP_1433: PP_1433 - Ribonuclease 3, at 1,634,070 to 1,634,759 _1433 PP_1434: PP_1434 - GTPase Era, at 1,634,746 to 1,635,654 _1434 Position (kb) 1634 1635Strain fitness (log2 ratio) -3 -2 -1 0 1at 1633.954 kb on + strandat 1633.954 kb on + strandat 1634.760 kb on + strandat 1635.640 kb on + strandat 1635.673 kb on + strandat 1635.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-3-Hydroxybutyric (C)
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1,633,954 + -3.2
1,633,954 + -2.1
1,634,760 + +0.4
1,635,640 + +0.1
1,635,673 + +0.3
1,635,723 - -0.2

Or see this region's nucleotide sequence