Experiment: DL-3-Hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0688 and PP_0689 are separated by 38 nucleotides PP_0689 and PP_0690 are separated by 188 nucleotides PP_0690 and PP_0691 are separated by 85 nucleotides
PP_0688: PP_0688 - 50S ribosomal protein L21, at 800,519 to 801,031
_0688
PP_0689: PP_0689 - 50S ribosomal protein L27, at 801,070 to 801,327
_0689
PP_0690: PP_0690 - GTPase Obg, at 801,516 to 802,742
_0690
PP_0691: PP_0691 - Glutamate 5-kinase, at 802,828 to 803,946
_0691
Position (kb) 801
802
803 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 801.427 kb on + strand at 802.728 kb on + strand at 802.728 kb on + strand at 802.728 kb on + strand at 802.753 kb on + strand at 802.788 kb on + strand at 802.798 kb on - strand at 802.801 kb on + strand at 802.801 kb on + strand at 802.802 kb on - strand at 802.802 kb on - strand at 802.814 kb on + strand at 802.814 kb on + strand at 802.866 kb on + strand at 802.976 kb on + strand, within PP_0691 at 803.358 kb on + strand, within PP_0691 at 803.359 kb on - strand, within PP_0691 at 803.359 kb on - strand, within PP_0691 at 803.359 kb on - strand, within PP_0691 at 803.359 kb on - strand at 803.405 kb on - strand, within PP_0691
Per-strain Table
Position Strand Gene LocusTag Fraction DL-3-Hydroxybutyric (C) remove 801,427 + +0.8 802,728 + +2.3 802,728 + -1.8 802,728 + +0.4 802,753 + -0.2 802,788 + -0.4 802,798 - -5.5 802,801 + -0.2 802,801 + -1.5 802,802 - -6.4 802,802 - -5.9 802,814 + -3.2 802,814 + -3.6 802,866 + -6.1 802,976 + PP_0691 0.13 -5.8 803,358 + PP_0691 0.47 -5.4 803,359 - PP_0691 0.47 -5.9 803,359 - PP_0691 0.47 -6.2 803,359 - PP_0691 0.47 -6.8 803,359 - -4.1 803,405 - PP_0691 0.52 -4.7
Or see this region's nucleotide sequence