Strain Fitness in Pseudomonas putida KT2440 around PP_0058

Experiment: DL-3-Hydroxyisobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0057 and PP_0058 are separated by 174 nucleotidesPP_0058 and PP_0059 are separated by 46 nucleotidesPP_0059 and PP_0060 are separated by 3 nucleotides PP_0057: PP_0057 - major facilitator family transporter, at 66,693 to 68,312 _0057 PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272 _0058 PP_0059: PP_0059 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 69,319 to 69,846 _0059 PP_0060: PP_0060 - glycine-tRNA ligase beta subunit, at 69,850 to 71,904 _0060 Position (kb) 68 69 70Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 67.488 kb on + strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.625 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.673 kb on - strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.708 kb on - strand, within PP_0057at 67.877 kb on + strand, within PP_0057at 67.897 kb on - strand, within PP_0057at 68.011 kb on + strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.023 kb on + strand, within PP_0057at 68.024 kb on - strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.134 kb on - strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.171 kb on + strandat 68.196 kb on + strandat 68.197 kb on - strandat 68.198 kb on + strandat 68.208 kb on - strandat 68.214 kb on + strandat 68.215 kb on - strandat 68.293 kb on + strandat 68.294 kb on - strandat 68.294 kb on - strandat 68.297 kb on + strandat 68.298 kb on - strandat 68.298 kb on - strandat 68.326 kb on + strandat 68.327 kb on - strandat 68.342 kb on - strandat 68.617 kb on + strand, within PP_0058at 68.618 kb on - strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.781 kb on + strand, within PP_0058at 68.859 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.964 kb on - strand, within PP_0058at 68.977 kb on + strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.121 kb on + strand, within PP_0058at 69.122 kb on - strand, within PP_0058at 69.139 kb on + strand, within PP_0058at 69.140 kb on - strand, within PP_0058at 69.220 kb on + strandat 69.258 kb on - strandat 69.258 kb on - strandat 69.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-3-Hydroxyisobutyric (C)
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67,488 + PP_0057 0.49 -3.5
67,489 - PP_0057 0.49 -3.3
67,489 - PP_0057 0.49 -5.4
67,489 - PP_0057 0.49 -1.7
67,489 - PP_0057 0.49 -2.4
67,503 + PP_0057 0.50 -3.7
67,503 + PP_0057 0.50 -3.4
67,504 - PP_0057 0.50 -4.9
67,504 - PP_0057 0.50 +0.0
67,504 - PP_0057 0.50 -3.0
67,504 - PP_0057 0.50 -0.6
67,504 - PP_0057 0.50 -4.8
67,625 + PP_0057 0.58 -2.0
67,672 + PP_0057 0.60 -6.6
67,672 + PP_0057 0.60 -2.2
67,673 - PP_0057 0.60 -3.7
67,677 + PP_0057 0.61 -2.4
67,677 + PP_0057 0.61 -0.5
67,677 + PP_0057 0.61 -3.7
67,677 + PP_0057 0.61 -3.1
67,678 - PP_0057 0.61 -5.9
67,678 - PP_0057 0.61 -2.8
67,678 - PP_0057 0.61 -3.0
67,678 - PP_0057 0.61 -1.2
67,678 - PP_0057 0.61 -6.2
67,678 - PP_0057 0.61 -3.9
67,678 - PP_0057 0.61 -3.9
67,708 - PP_0057 0.63 -4.3
67,877 + PP_0057 0.73 -2.1
67,897 - PP_0057 0.74 -3.4
68,011 + PP_0057 0.81 -1.4
68,012 - PP_0057 0.81 -5.7
68,012 - PP_0057 0.81 -4.2
68,012 - PP_0057 0.81 -2.0
68,012 - PP_0057 0.81 -3.4
68,012 - PP_0057 0.81 -3.8
68,023 + PP_0057 0.82 -3.7
68,024 - PP_0057 0.82 -3.4
68,061 + PP_0057 0.84 -2.3
68,061 + PP_0057 0.84 -1.9
68,061 + PP_0057 0.84 -3.7
68,062 - PP_0057 0.85 -6.1
68,062 - PP_0057 0.85 -1.9
68,062 - PP_0057 0.85 -3.7
68,062 - PP_0057 0.85 -6.8
68,112 + PP_0057 0.88 -5.6
68,112 + PP_0057 0.88 +0.4
68,113 - PP_0057 0.88 -4.3
68,113 - PP_0057 0.88 -1.7
68,134 - PP_0057 0.89 -5.5
68,144 + PP_0057 0.90 -6.1
68,144 + PP_0057 0.90 -3.3
68,171 + -2.8
68,196 + -0.6
68,197 - +0.0
68,198 + +0.4
68,208 - -5.5
68,214 + -0.5
68,215 - -3.8
68,293 + -6.3
68,294 - -6.1
68,294 - -7.0
68,297 + -3.7
68,298 - -5.7
68,298 - -3.0
68,326 + -1.2
68,327 - -1.5
68,342 - -0.6
68,617 + PP_0058 0.17 +0.3
68,618 - PP_0058 0.17 -0.9
68,634 + PP_0058 0.19 +0.5
68,634 + PP_0058 0.19 +0.0
68,781 + PP_0058 0.37 +0.5
68,859 + PP_0058 0.47 +0.2
68,931 + PP_0058 0.56 +0.1
68,931 + PP_0058 0.56 +0.2
68,932 - PP_0058 0.57 +0.3
68,932 - PP_0058 0.57 -0.4
68,932 - PP_0058 0.57 -0.1
68,935 + PP_0058 0.57 +0.4
68,935 + PP_0058 0.57 -0.1
68,935 + PP_0058 0.57 +0.3
68,935 + PP_0058 0.57 +0.4
68,935 + PP_0058 0.57 +0.4
68,935 + PP_0058 0.57 +0.6
68,935 + PP_0058 0.57 +0.3
68,935 + PP_0058 0.57 -0.1
68,936 - PP_0058 0.57 +0.2
68,936 - PP_0058 0.57 +0.3
68,936 - PP_0058 0.57 -0.1
68,936 - PP_0058 0.57 +0.1
68,936 - PP_0058 0.57 -0.0
68,936 - PP_0058 0.57 -0.1
68,964 - PP_0058 0.61 +0.1
68,977 + PP_0058 0.62 +0.2
69,071 - PP_0058 0.74 +0.0
69,071 - PP_0058 0.74 +0.2
69,121 + PP_0058 0.81 +0.6
69,122 - PP_0058 0.81 +0.3
69,139 + PP_0058 0.83 -0.1
69,140 - PP_0058 0.83 +0.1
69,220 + +0.5
69,258 - +0.3
69,258 - +0.5
69,268 - +0.0

Or see this region's nucleotide sequence