Strain Fitness in Pseudomonas putida KT2440 around PP_5355

Experiment: MOPS minimal media_Glucose20mM with Lithium chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM
6,103,821	+		PP_5353	0.76	+0.6
6,103,821	+		PP_5353	0.76	+0.5
6,103,821	+		PP_5353	0.76	-1.1
6,103,821	+		PP_5353	0.76	+0.5
6,103,821	+		PP_5353	0.76	+1.4
6,103,821	+		PP_5353	0.76	+0.4
6,103,821	+		PP_5353	0.76	+0.1
6,103,822	-		PP_5353	0.76	-0.7
6,103,822	-		PP_5353	0.76	-2.0
6,103,825	+		PP_5353	0.77	+1.6
6,103,825	+		PP_5353	0.77	+1.4
6,103,825	+		PP_5353	0.77	-0.4
6,103,826	-		PP_5353	0.77	-0.2
6,103,826	-		PP_5353	0.77	-0.6
6,104,020	+				+0.5
6,104,034	+				-0.4
6,104,034	+				+0.5
6,104,034	+				+0.3
6,104,035	-				-0.1
6,104,087	-				-1.1
6,104,090	-				+0.4
6,104,090	-				+0.2
6,104,090	-				-0.1
6,104,094	+				+0.5
6,104,094	+				-2.7
6,104,094	+				-1.8
6,104,095	-				-0.9
6,104,095	-				-0.4
6,104,095	-				-0.2
6,104,095	-				+1.4
6,104,095	-				-0.0
6,104,095	-				+0.6
6,104,096	+				+0.6
6,104,096	+				+0.7
6,104,097	-				+0.3
6,104,097	-				+0.6
6,104,116	+				+0.4
6,104,116	+				+0.7
6,104,116	+				-0.4
6,104,116	+				+0.8
6,104,116	+				+0.8
6,104,117	-				-0.6
6,104,117	-				+0.2
6,104,246	+		PP_5354	0.27	-0.6
6,104,246	+		PP_5354	0.27	+1.8
6,104,247	-		PP_5354	0.27	+0.2
6,104,281	+		PP_5354	0.36	+0.2
6,104,282	-		PP_5354	0.36	+0.1
6,104,295	+		PP_5354	0.39	+0.4
6,104,295	+		PP_5354	0.39	-1.6
6,104,296	-		PP_5354	0.39	-0.2
6,104,315	+		PP_5354	0.44	-1.2
6,104,316	-		PP_5354	0.44	-0.1
6,104,343	+		PP_5354	0.51	+0.9
6,104,343	+		PP_5354	0.51	+1.1
6,104,343	+		PP_5354	0.51	-2.0
6,104,343	+		PP_5354	0.51	+0.7
6,104,343	+		PP_5354	0.51	+0.1
6,104,343	+		PP_5354	0.51	-1.9
6,104,344	-		PP_5354	0.51	-0.3
6,104,344	-		PP_5354	0.51	-0.8
6,104,344	-		PP_5354	0.51	-0.7
6,104,344	-		PP_5354	0.51	-0.0
6,104,344	-		PP_5354	0.51	+0.1
6,104,344	-		PP_5354	0.51	-0.8
6,104,344	-		PP_5354	0.51	-0.6
6,104,424	+		PP_5354	0.71	-1.3
6,104,424	+		PP_5354	0.71	+0.8
6,104,424	+		PP_5354	0.71	+0.1
6,104,425	-		PP_5354	0.71	-0.7
6,104,425	-		PP_5354	0.71	+0.0
6,104,425	-		PP_5354	0.71	-0.2
6,104,425	-		PP_5354	0.71	-2.1
6,104,427	+		PP_5354	0.71	-0.3
6,104,427	+		PP_5354	0.71	+0.1
6,104,427	+		PP_5354	0.71	+0.7
6,104,428	-		PP_5354	0.72	+2.4
6,104,428	-		PP_5354	0.72	+0.2
6,104,428	-		PP_5354	0.72	+0.2
6,104,548	+				-0.4
6,104,557	+				-0.3
6,104,559	+				-0.3
6,104,559	+				+1.6
6,104,559	+				+0.5
6,104,559	+				-0.0
6,104,559	+				-0.8
6,104,559	+				+0.6
6,104,559	+				+1.0
6,104,559	+				+0.2
6,104,560	-				-0.4
6,104,560	-				-0.2
6,104,560	-				-1.1
6,104,560	-				+1.1
6,104,560	-				+1.1
6,104,560	-				-0.9
6,104,560	-				-1.1
6,104,593	+				+0.7
6,104,593	+				+0.2
6,104,647	-				+0.8
6,104,647	-				-0.4
6,104,647	-				-1.0
6,104,648	+				+0.2
6,104,648	+				-0.3
6,104,649	-				-1.4
6,104,676	-				+0.3
6,104,806	+				-0.3
6,104,807	-				-0.7
6,104,807	-				+0.1
6,104,937	+		PP_5355	0.14	+0.4
6,104,998	+		PP_5355	0.17	-0.2
6,104,998	+		PP_5355	0.17	+0.3
6,104,999	-		PP_5355	0.17	-1.5
6,104,999	-		PP_5355	0.17	+0.6
6,105,335	+		PP_5355	0.36	-1.3
6,105,335	+		PP_5355	0.36	-0.2
6,105,336	-		PP_5355	0.36	-0.9
6,105,336	-		PP_5355	0.36	-1.9
6,105,336	-		PP_5355	0.36	+0.1
6,105,351	+		PP_5355	0.37	+0.6
6,105,351	+		PP_5355	0.37	+1.8
6,105,351	+		PP_5355	0.37	+0.8
6,105,351	+		PP_5355	0.37	+0.0
6,105,351	+		PP_5355	0.37	+2.0
6,105,352	-		PP_5355	0.37	+0.5
6,105,352	-		PP_5355	0.37	-0.3
6,105,364	+		PP_5355	0.38	+0.7
6,105,384	-		PP_5355	0.39	+1.2
6,105,385	+		PP_5355	0.39	-0.0
6,105,386	-		PP_5355	0.39	+0.6
6,105,386	-		PP_5355	0.39	-0.8
6,105,386	-		PP_5355	0.39	+0.3
6,105,475	+		PP_5355	0.44	-0.2
6,105,483	+		PP_5355	0.45	-0.4
6,105,483	+		PP_5355	0.45	-0.2
6,105,484	-		PP_5355	0.45	-0.5
6,105,484	-		PP_5355	0.45	+0.1
6,105,502	+		PP_5355	0.46	+0.9
6,105,504	+		PP_5355	0.46	+0.4
6,105,505	-		PP_5355	0.46	+0.9
6,105,505	-		PP_5355	0.46	+0.5
6,105,562	+		PP_5355	0.49	+1.9
6,105,563	-		PP_5355	0.49	+0.6
6,105,563	-		PP_5355	0.49	-0.7
6,105,578	+		PP_5355	0.50	+1.2
6,105,629	-		PP_5355	0.53	+3.1
6,105,733	-		PP_5355	0.59	+1.1
6,105,733	-		PP_5355	0.59	+0.8
6,105,737	+		PP_5355	0.59	-0.3
6,105,737	+		PP_5355	0.59	-1.4
6,105,738	-		PP_5355	0.59	+0.8
6,105,738	-		PP_5355	0.59	+0.1
6,105,836	-		PP_5355	0.65	+1.9
6,105,836	-		PP_5355	0.65	+1.0
6,105,966	+		PP_5355	0.72	-0.5
6,106,355	+				+0.8
6,106,356	-				+0.1
6,106,356	-				-0.1
6,106,356	-				+0.1
6,106,466	+				-0.2
6,106,466	+				-1.2
6,106,467	-				+0.4
6,106,467	-				-0.1
6,106,467	-				-0.1
6,106,539	+				-0.2
6,106,539	+				+0.6
6,106,539	+				+0.4
6,106,540	-				+0.5
6,106,540	-				+0.2
6,106,540	-				-1.2
6,106,543	+				+1.2
6,106,543	+				+0.8
6,106,543	+				-1.5
6,106,543	+				+1.1
6,106,543	+				-0.0
6,106,543	+				-0.5
6,106,544	-				+0.6
6,106,544	-				-0.1
6,106,548	+				+0.3
6,106,549	-				-0.2
6,106,549	-				+0.2
6,106,582	+				-0.4
6,106,583	-				+1.3
6,106,583	-				+0.0
6,106,583	-				-0.1
6,106,583	-				+0.2
6,106,583	-				-0.4
6,106,583	-				+0.3
6,106,625	+				+0.1
6,106,626	-				-0.6
6,106,626	-				+0.4
6,106,750	-				+0.5
6,106,798	-				-0.0
6,106,798	-				-0.1
6,106,798	-				+1.1
6,106,871	+		PP_5356	0.15	+1.1
6,106,871	+		PP_5356	0.15	-0.5
6,106,871	+		PP_5356	0.15	+0.4
6,106,871	+		PP_5356	0.15	+0.5
6,106,871	+		PP_5356	0.15	-2.0
6,106,872	-		PP_5356	0.15	+1.0
6,106,872	-		PP_5356	0.15	+1.4
6,106,872	-		PP_5356	0.15	-2.5
6,106,872	-		PP_5356	0.15	-0.6
6,106,872	-		PP_5356	0.15	-0.8
6,106,872	-		PP_5356	0.15	-0.1
6,106,872	-		PP_5356	0.15	-0.8
6,106,872	-		PP_5356	0.15	-1.3
6,106,895	-		PP_5356	0.20	+2.4
6,106,895	-		PP_5356	0.20	+0.1
6,106,912	+		PP_5356	0.23	+0.3
6,106,912	+		PP_5356	0.23	+0.1
6,106,912	+		PP_5356	0.23	+0.3
6,106,912	+		PP_5356	0.23	+0.2
6,106,912	+		PP_5356	0.23	+0.1
6,106,912	+		PP_5356	0.23	+1.0
6,106,912	+		PP_5356	0.23	-0.4
6,106,913	-		PP_5356	0.24	+2.4
6,106,913	-		PP_5356	0.24	-0.4
6,106,913	-		PP_5356	0.24	-0.1
6,106,913	-		PP_5356	0.24	-0.6
6,106,913	-		PP_5356	0.24	-0.1
6,106,913	-		PP_5356	0.24	-0.5
6,106,942	+		PP_5356	0.30	+0.5
6,106,942	+		PP_5356	0.30	-0.3
6,106,943	-		PP_5356	0.30	-1.1
6,106,943	-		PP_5356	0.30	-0.4
6,106,943	-		PP_5356	0.30	-0.0
6,107,281	+				+0.9
6,107,281	+				-0.0
6,107,292	+				+1.0
6,107,359	+				+0.5
6,107,360	-				-0.2
6,107,360	-				-0.4
6,107,360	-				-0.8