Experiment: MOPS minimal media_Glucose20mM with Lithium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5047 and PP_5048 overlap by 4 nucleotides PP_5048 and PP_5050 are separated by 687 nucleotides
PP_5047: PP_5047 - two-component system sensory histidine kinase/phosphatase GlnL/GlnG, at 5,753,805 to 5,754,890
_5047
PP_5048: PP_5048 - two-component system DNA-binding transcriptional dual regulator GlnL/GlnG, at 5,754,887 to 5,756,323
_5048
PP_5050: PP_5050 - transposase, at 5,757,011 to 5,757,976
_5050
Position (kb) 5754
5755
5756
5757 Strain fitness (log2 ratio) -1
0
1
2
3 at 5753.892 kb on + strand at 5753.892 kb on + strand at 5753.892 kb on + strand at 5753.893 kb on - strand at 5754.050 kb on + strand, within PP_5047 at 5754.051 kb on - strand, within PP_5047 at 5754.092 kb on - strand, within PP_5047 at 5754.274 kb on + strand, within PP_5047 at 5754.312 kb on + strand, within PP_5047 at 5754.313 kb on - strand, within PP_5047 at 5754.313 kb on - strand, within PP_5047 at 5754.407 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.729 kb on + strand, within PP_5047 at 5754.730 kb on - strand, within PP_5047 at 5754.779 kb on + strand, within PP_5047 at 5754.855 kb on + strand at 5754.855 kb on + strand at 5754.855 kb on + strand at 5754.856 kb on - strand at 5754.856 kb on - strand at 5754.856 kb on - strand at 5754.907 kb on - strand at 5755.169 kb on + strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.170 kb on - strand, within PP_5048 at 5755.190 kb on + strand, within PP_5048 at 5755.674 kb on - strand, within PP_5048 at 5755.805 kb on - strand, within PP_5048 at 5755.810 kb on + strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5755.811 kb on - strand, within PP_5048 at 5756.333 kb on + strand at 5756.334 kb on - strand at 5756.524 kb on - strand at 5756.564 kb on + strand at 5756.564 kb on + strand at 5756.565 kb on - strand at 5756.579 kb on - strand at 5756.579 kb on - strand at 5756.579 kb on - strand at 5756.656 kb on + strand at 5756.657 kb on - strand at 5756.678 kb on + strand at 5756.678 kb on + strand at 5756.678 kb on + strand at 5756.679 kb on - strand at 5756.711 kb on - strand at 5756.811 kb on - strand at 5756.811 kb on - strand at 5756.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Lithium chloride 200 mM remove 5,753,892 + +0.6 5,753,892 + -1.1 5,753,892 + +0.5 5,753,893 - +1.1 5,754,050 + PP_5047 0.23 -0.5 5,754,051 - PP_5047 0.23 -0.4 5,754,092 - PP_5047 0.26 -0.9 5,754,274 + PP_5047 0.43 -0.5 5,754,312 + PP_5047 0.47 -0.4 5,754,313 - PP_5047 0.47 +0.5 5,754,313 - PP_5047 0.47 +2.0 5,754,407 + PP_5047 0.55 -0.1 5,754,729 + PP_5047 0.85 +0.6 5,754,729 + PP_5047 0.85 -0.4 5,754,729 + PP_5047 0.85 -0.8 5,754,729 + PP_5047 0.85 -0.3 5,754,730 - PP_5047 0.85 +0.8 5,754,779 + PP_5047 0.90 +0.2 5,754,855 + -1.2 5,754,855 + -0.0 5,754,855 + +1.3 5,754,856 - +1.9 5,754,856 - +0.9 5,754,856 - +1.4 5,754,907 - +0.9 5,755,169 + PP_5048 0.20 +0.7 5,755,170 - PP_5048 0.20 +1.7 5,755,170 - PP_5048 0.20 +0.6 5,755,170 - PP_5048 0.20 +0.6 5,755,170 - PP_5048 0.20 +2.0 5,755,190 + PP_5048 0.21 +0.6 5,755,674 - PP_5048 0.55 +0.9 5,755,805 - PP_5048 0.64 +1.0 5,755,810 + PP_5048 0.64 +0.8 5,755,811 - PP_5048 0.64 +0.4 5,755,811 - PP_5048 0.64 +0.7 5,755,811 - PP_5048 0.64 +0.7 5,756,333 + +0.7 5,756,334 - +0.1 5,756,524 - -1.3 5,756,564 + -0.4 5,756,564 + -0.1 5,756,565 - -1.3 5,756,579 - +0.9 5,756,579 - -0.4 5,756,579 - +0.5 5,756,656 + +0.5 5,756,657 - -1.2 5,756,678 + -0.9 5,756,678 + -0.2 5,756,678 + +1.4 5,756,679 - +2.3 5,756,711 - -0.5 5,756,811 - +3.0 5,756,811 - +1.3 5,756,816 - +0.2
Or see this region's nucleotide sequence