Strain Fitness in Pseudomonas putida KT2440 around PP_0379

Experiment: MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0377 and PP_0378 overlap by 4 nucleotidesPP_0378 and PP_0379 are separated by 163 nucleotidesPP_0379 and PP_0380 are separated by 78 nucleotidesPP_0380 and PP_0381 are separated by 159 nucleotides PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027 _0377 PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779 _0378 PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854 _0379 PP_0380: PP_0380 - Coenzyme PQQ synthesis protein A, at 459,933 to 460,004 _0380 PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464 _0381 Position (kb) 458 459 460Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 457.973 kb on - strand, within PP_0377at 458.005 kb on - strandat 458.012 kb on + strandat 458.027 kb on + strandat 458.027 kb on + strandat 458.028 kb on - strandat 458.119 kb on + strand, within PP_0378at 458.120 kb on - strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.162 kb on - strand, within PP_0378at 458.187 kb on + strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.257 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.623 kb on - strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.626 kb on - strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.695 kb on - strand, within PP_0378at 458.712 kb on + strandat 458.712 kb on + strandat 458.712 kb on + strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.715 kb on + strandat 458.716 kb on - strandat 458.795 kb on - strandat 458.804 kb on - strandat 458.804 kb on - strandat 458.940 kb on + strandat 458.944 kb on + strandat 458.944 kb on + strandat 458.945 kb on - strandat 459.053 kb on + strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.054 kb on - strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.057 kb on + strand, within PP_0379at 459.058 kb on - strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.700 kb on - strand, within PP_0379at 459.700 kb on - strand, within PP_0379at 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.866 kb on - strandat 459.923 kb on + strandat 459.923 kb on + strandat 459.923 kb on + strandat 459.935 kb on - strandat 459.949 kb on + strand, within PP_0380at 459.949 kb on + strand, within PP_0380at 459.949 kb on + strand, within PP_0380at 459.950 kb on - strandat 459.950 kb on - strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.986 kb on - strand, within PP_0380at 460.010 kb on + strandat 460.010 kb on + strandat 460.010 kb on + strandat 460.011 kb on - strandat 460.044 kb on - strandat 460.044 kb on - strandat 460.044 kb on - strandat 460.046 kb on + strandat 460.047 kb on - strandat 460.095 kb on + strandat 460.100 kb on + strandat 460.100 kb on + strandat 460.100 kb on + strandat 460.101 kb on - strandat 460.126 kb on + strandat 460.130 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.162 kb on - strandat 460.162 kb on - strandat 460.218 kb on + strandat 460.219 kb on - strandat 460.219 kb on - strandat 460.289 kb on + strandat 460.570 kb on - strand, within PP_0381at 460.730 kb on + strand, within PP_0381at 460.731 kb on - strand, within PP_0381

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM
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457,973 - PP_0377 0.80 -1.6
458,005 - +0.1
458,012 + -2.7
458,027 + -2.9
458,027 + -3.2
458,028 - -0.9
458,119 + PP_0378 0.13 -0.5
458,120 - PP_0378 0.13 -2.2
458,161 + PP_0378 0.18 -1.9
458,161 + PP_0378 0.18 -2.5
458,161 + PP_0378 0.18 -3.8
458,162 - PP_0378 0.18 -3.5
458,187 + PP_0378 0.22 -0.9
458,188 - PP_0378 0.22 -1.8
458,188 - PP_0378 0.22 -4.1
458,256 + PP_0378 0.31 -2.1
458,256 + PP_0378 0.31 -3.3
458,257 - PP_0378 0.31 -4.7
458,430 - PP_0378 0.54 +0.1
458,430 - PP_0378 0.54 -2.6
458,430 - PP_0378 0.54 -1.6
458,622 + PP_0378 0.79 -2.5
458,622 + PP_0378 0.79 -3.4
458,623 - PP_0378 0.79 -2.6
458,625 + PP_0378 0.79 -5.6
458,625 + PP_0378 0.79 -0.2
458,626 - PP_0378 0.80 -2.9
458,694 + PP_0378 0.89 -3.4
458,694 + PP_0378 0.89 -1.5
458,695 - PP_0378 0.89 -1.1
458,712 + +1.1
458,712 + -4.2
458,712 + -4.9
458,713 - -3.9
458,713 - -5.2
458,713 - -3.1
458,715 + -2.6
458,716 - -4.9
458,795 - -2.0
458,804 - -0.2
458,804 - +0.2
458,940 + +0.1
458,944 + -2.0
458,944 + -0.9
458,945 - +0.1
459,053 + PP_0379 0.12 -6.2
459,054 - PP_0379 0.12 -1.3
459,054 - PP_0379 0.12 -0.1
459,054 - PP_0379 0.12 -2.0
459,054 - PP_0379 0.12 -0.1
459,057 + PP_0379 0.12 -2.4
459,057 + PP_0379 0.12 -3.3
459,057 + PP_0379 0.12 -1.6
459,058 - PP_0379 0.13 -1.6
459,246 + PP_0379 0.33 +0.5
459,246 + PP_0379 0.33 -2.8
459,246 + PP_0379 0.33 -2.4
459,268 + PP_0379 0.36 -2.5
459,268 + PP_0379 0.36 -2.1
459,352 + PP_0379 0.45 +2.1
459,352 + PP_0379 0.45 -2.4
459,700 - PP_0379 0.83 -3.2
459,700 - PP_0379 0.83 -2.5
459,850 + -4.0
459,850 + -3.1
459,850 + -0.6
459,850 + -0.7
459,850 + -2.4
459,850 + -0.5
459,850 + -1.8
459,851 - -0.8
459,851 - -0.1
459,851 - -2.9
459,851 - +0.5
459,866 - -2.1
459,923 + -3.0
459,923 + -2.5
459,923 + -3.2
459,935 - -0.6
459,949 + PP_0380 0.22 -2.9
459,949 + PP_0380 0.22 -2.2
459,949 + PP_0380 0.22 -2.9
459,950 - +2.1
459,950 - PP_0380 0.24 +0.8
459,985 + PP_0380 0.72 -0.7
459,985 + PP_0380 0.72 -2.8
459,985 + PP_0380 0.72 -3.1
459,985 + PP_0380 0.72 -0.0
459,985 + PP_0380 0.72 -0.8
459,985 + PP_0380 0.72 -2.2
459,986 - PP_0380 0.74 -1.8
460,010 + -1.4
460,010 + -4.0
460,010 + -2.1
460,011 - -0.9
460,044 - -1.2
460,044 - -0.8
460,044 - +0.0
460,046 + -2.8
460,047 - +0.9
460,095 + -1.4
460,100 + -1.4
460,100 + -0.9
460,100 + -0.1
460,101 - -0.7
460,126 + -1.7
460,130 + -1.6
460,161 + -0.5
460,161 + +1.5
460,161 + -0.9
460,161 + -1.8
460,162 - -0.2
460,162 - -1.0
460,218 + -1.1
460,219 - +0.7
460,219 - +0.6
460,289 + -3.1
460,570 - PP_0381 0.18 -1.5
460,730 + PP_0381 0.25 -1.6
460,731 - PP_0381 0.25 +0.2

Or see this region's nucleotide sequence