Strain Fitness in Pseudomonas putida KT2440 around PP_5621

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
4,209,851	+		PP_3692	0.67	+0.2
4,209,851	+		PP_3692	0.67	-0.9
4,209,852	-		PP_3692	0.67	+1.5
4,209,882	+		PP_3692	0.69	-0.2
4,209,882	+		PP_3692	0.69	-0.0
4,209,883	-		PP_3692	0.69	-0.1
4,209,883	-		PP_3692	0.69	+0.9
4,209,883	-		PP_3692	0.69	+0.1
4,209,885	+		PP_3692	0.69	+0.2
4,209,961	-		PP_3692	0.71	+1.4
4,209,961	-		PP_3692	0.71	-1.1
4,209,961	-		PP_3692	0.71	-0.5
4,210,000	-		PP_3692	0.73	-0.5
4,210,000	-		PP_3692	0.73	-0.2
4,210,020	+		PP_3692	0.74	+1.5
4,210,020	+		PP_3692	0.74	+0.3
4,210,020	+		PP_3692	0.74	-2.7
4,210,021	-		PP_3692	0.74	-0.2
4,210,079	-		PP_3692	0.76	+0.1
4,210,104	+		PP_3692	0.77	+0.1
4,210,104	+		PP_3692	0.77	+1.4
4,210,104	+		PP_3692	0.77	-0.9
4,210,149	+		PP_3692	0.79	-0.0
4,210,280	-		PP_3692	0.83	-1.6
4,210,291	+				+1.7
4,210,352	+		PP_3692	0.86	+0.2
4,210,353	-		PP_3692	0.86	-1.8
4,210,415	+		PP_3692	0.88	+0.1
4,210,415	+		PP_3692	0.88	+2.0
4,210,415	+		PP_3692	0.88	+0.1
4,210,415	+		PP_3692	0.88	-0.2
4,210,415	+		PP_3692	0.88	-0.1
4,210,416	-		PP_3692	0.88	+0.0
4,210,500	+				-1.5
4,210,501	-				+0.3
4,210,525	+				-0.6
4,210,543	+				+0.5
4,210,543	+				-0.6
4,210,543	+				-0.3
4,210,544	-				-0.3
4,210,544	-				+2.0
4,210,544	-				+0.2
4,210,544	-				+0.0
4,210,602	-				-0.3
4,210,656	+				+2.1
4,210,656	+				-1.5
4,210,690	+				-0.9
4,210,690	+				-0.2
4,210,691	-				+2.0
4,210,721	+				+0.8
4,210,721	+				+0.8
4,210,721	+				+0.4
4,210,722	-				-0.0
4,210,722	-				-0.3
4,210,729	+				+0.2
4,210,730	-				-0.3
4,210,773	-				+0.4
4,210,789	+				+0.3
4,210,789	+				-0.1
4,210,789	+				-2.1
4,210,790	-				+0.5
4,210,790	-				-0.3
4,210,790	-				+1.0
4,210,790	-				-0.0
4,210,790	-				-0.7
4,210,819	+				-2.5
4,210,820	-				-0.3
4,210,820	-				-0.6
4,210,843	-		PP_5621	0.18	+0.2
4,211,029	-		PP_5621	0.83	+2.2
4,211,029	-		PP_5621	0.83	+0.1
4,211,066	+				-0.7
4,211,066	+				-0.0
4,211,066	+				+0.4
4,211,093	-				+0.7
4,211,103	+				+2.8
4,211,116	+				-2.2
4,211,131	+				-0.8
4,211,164	-		PP_3693	0.10	-0.0
4,211,241	+		PP_3693	0.31	+1.1
4,211,250	-		PP_3693	0.34	-0.7
4,211,330	+		PP_3693	0.56	+1.3
4,211,331	-		PP_3693	0.56	-0.2
4,211,352	+		PP_3693	0.62	+0.3
4,211,352	+		PP_3693	0.62	+2.0
4,211,353	-		PP_3693	0.62	-0.1
4,211,492	+				-2.8
4,211,492	+				+0.2
4,211,493	-				-0.5
4,211,510	+				+0.1
4,211,511	-				-0.6
4,211,522	+				+0.4
4,211,620	+				+1.4
4,211,620	+				+0.9
4,211,621	-				+1.3
4,211,629	-				+0.1
4,211,629	-				-0.3
4,211,637	+				-1.5
4,211,637	+				+0.2
4,211,645	+				-0.8
4,211,678	-				+0.2
4,211,678	-				+0.2
4,211,678	-				-1.9
4,211,683	+				-0.0
4,211,683	+				-1.5
4,211,683	+				-2.0
4,211,688	-				-0.0
4,211,688	-				-1.4
4,211,748	+				-0.6
4,211,773	-		PP_3694	0.12	-0.1
4,211,788	-		PP_3694	0.14	+0.9
4,211,788	-		PP_3694	0.14	+0.9
4,211,788	-		PP_3694	0.14	+0.1
4,211,799	+		PP_3694	0.15	+0.3
4,211,800	-		PP_3694	0.15	+3.3
4,211,800	-		PP_3694	0.15	+0.3
4,211,835	+		PP_3694	0.19	+0.5
4,211,836	-		PP_3694	0.19	+1.2
4,211,836	-		PP_3694	0.19	-0.4
4,211,847	-		PP_3694	0.20	-1.9
4,211,857	+		PP_3694	0.21	+0.3
4,211,858	-		PP_3694	0.21	-0.2
4,211,858	-		PP_3694	0.21	+0.2
4,211,908	+		PP_3694	0.26	-1.4
4,211,932	+		PP_3694	0.29	-0.2
4,211,933	-		PP_3694	0.29	+0.5
4,211,933	-		PP_3694	0.29	-1.4
4,211,933	-		PP_3694	0.29	-0.1
4,211,933	-		PP_3694	0.29	-0.2
4,211,933	-		PP_3694	0.29	+0.1
4,211,943	+		PP_3694	0.30	-2.8
4,211,944	-		PP_3694	0.30	+0.4
4,211,958	-		PP_3694	0.31	-1.7
4,212,006	+		PP_3694	0.36	+0.3
4,212,007	-		PP_3694	0.37	-3.0