Strain Fitness in Pseudomonas putida KT2440 around PP_5528

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
2,822,584	+		PP_2476	0.15	+0.4
2,822,584	+		PP_2476	0.15	-1.8
2,822,585	-		PP_2476	0.15	+0.0
2,822,585	-		PP_2476	0.15	-1.4
2,822,617	+		PP_2476	0.18	+1.6
2,822,617	+		PP_2476	0.18	+1.2
2,822,617	+		PP_2476	0.18	+0.6
2,822,618	-		PP_2476	0.18	+0.4
2,822,618	-		PP_2476	0.18	+1.8
2,822,663	+		PP_2476	0.23	-0.4
2,822,663	+		PP_2476	0.23	+0.2
2,822,663	+		PP_2476	0.23	-0.7
2,822,663	+		PP_2476	0.23	-1.1
2,822,663	+		PP_2476	0.23	+0.3
2,822,663	+		PP_2476	0.23	-1.0
2,822,663	+		PP_2476	0.23	+0.3
2,822,663	+		PP_2476	0.23	-0.5
2,822,664	-		PP_2476	0.23	-0.7
2,822,664	-		PP_2476	0.23	+0.3
2,822,664	-		PP_2476	0.23	+1.3
2,822,664	-		PP_2476	0.23	+0.6
2,822,664	-		PP_2476	0.23	+0.6
2,822,664	-		PP_2476	0.23	-0.0
2,822,695	+		PP_2476	0.26	-1.4
2,822,695	+		PP_2476	0.26	-0.6
2,822,695	+				+0.6
2,822,800	+		PP_2476	0.36	+0.6
2,822,800	+		PP_2476	0.36	+1.2
2,822,801	-		PP_2476	0.36	+1.0
2,822,801	-		PP_2476	0.36	+0.6
2,822,801	-		PP_2476	0.36	+0.4
2,822,801	-		PP_2476	0.36	+0.8
2,822,801	-		PP_2476	0.36	-0.3
2,822,839	+		PP_2476	0.40	+0.4
2,822,839	+				+0.5
2,822,839	+		PP_2476	0.40	+1.7
2,822,839	+		PP_2476	0.40	-1.0
2,822,839	+		PP_2476	0.40	-0.2
2,822,839	+		PP_2476	0.40	+0.1
2,822,839	+		PP_2476	0.40	-0.4
2,822,839	+		PP_2476	0.40	+0.3
2,822,839	+		PP_2476	0.40	+0.4
2,822,840	-		PP_2476	0.40	-1.2
2,822,840	-		PP_2476	0.40	-0.9
2,822,840	-		PP_2476	0.40	-0.5
2,822,841	+		PP_2476	0.40	-0.4
2,823,027	-		PP_2476	0.58	+1.9
2,823,092	-		PP_2476	0.64	+0.3
2,823,092	-		PP_2476	0.64	-0.3
2,823,144	+		PP_2476	0.69	-0.0
2,823,322	-		PP_2476	0.86	+0.2
2,823,394	-				+1.4
2,823,521	-				+1.2
2,823,557	+				+0.8
2,823,582	+				-0.8
2,823,582	+				-0.9
2,823,582	+				+0.2
2,823,583	-				+0.0
2,823,583	-				-0.3
2,823,588	+				+0.0
2,823,588	+				-1.1
2,823,746	+		PP_5528	0.67	-0.2
2,823,747	-		PP_5528	0.67	+2.0
2,823,807	-				-0.1
2,823,816	-				-0.2
2,823,842	-				-0.3
2,823,908	+				-0.1
2,823,979	-		PP_2477	0.12	-0.6
2,823,989	+		PP_2477	0.14	-1.3
2,823,990	-		PP_2477	0.14	-1.8
2,824,030	+		PP_2477	0.23	-1.2
2,824,030	+		PP_2477	0.23	+1.6
2,824,030	+		PP_2477	0.23	-0.1
2,824,030	+		PP_2477	0.23	+0.0
2,824,030	+		PP_2477	0.23	-1.0
2,824,031	-		PP_2477	0.23	-0.8
2,824,031	-		PP_2477	0.23	+0.3
2,824,333	+		PP_2477	0.88	-0.2
2,824,334	-		PP_2477	0.89	-1.3
2,824,334	-		PP_2477	0.89	+0.9
2,824,399	+				+2.4
2,824,415	-				-1.2
2,824,417	+				-3.5
2,824,418	-				+0.1
2,824,418	-				+0.4
2,824,418	-				+1.4
2,824,418	-				+0.5
2,824,418	-				+0.0
2,824,477	+				+0.6
2,824,477	+				-0.8
2,824,477	+				-2.1
2,824,477	+				+0.2
2,824,477	+				-0.0
2,824,562	+				+0.2
2,824,730	+		PP_2478	0.16	-0.5
2,824,731	-		PP_2478	0.16	-0.6
2,824,731	-		PP_2478	0.16	-2.0
2,824,732	+		PP_2478	0.16	-0.7
2,824,777	+		PP_2478	0.18	-1.4
2,824,778	-		PP_2478	0.18	-0.2
2,824,778	-		PP_2478	0.18	-0.5
2,824,786	+		PP_2478	0.18	-0.8
2,824,817	-		PP_2478	0.20	+0.9