Strain Fitness in Pseudomonas putida KT2440 around PP_5428

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
142,074	+				-0.2
142,074	+				+1.0
142,075	-				+0.2
142,111	-				+0.0
142,316	+		PP_0134	0.32	+0.1
142,317	-		PP_0134	0.32	+0.7
142,376	-		PP_0134	0.39	-0.2
142,458	+		PP_0134	0.49	+0.8
142,458	+		PP_0134	0.49	-0.3
142,458	+		PP_0134	0.49	-0.7
142,458	+		PP_0134	0.49	+0.2
142,459	-		PP_0134	0.49	+0.2
142,459	-		PP_0134	0.49	+0.6
142,459	-		PP_0134	0.49	-0.4
142,459	-		PP_0134	0.49	+0.9
142,460	+		PP_0134	0.49	+0.7
142,460	+		PP_0134	0.49	+0.4
142,460	+		PP_0134	0.49	+0.4
142,460	+		PP_0134	0.49	-0.7
142,461	-		PP_0134	0.49	+0.8
142,461	-		PP_0134	0.49	-0.9
142,461	-		PP_0134	0.49	-0.5
142,461	-		PP_0134	0.49	-2.2
142,461	-		PP_0134	0.49	-0.1
142,461	-		PP_0134	0.49	-0.6
142,461	-		PP_0134	0.49	+0.5
142,466	+		PP_0134	0.50	+0.9
142,466	+		PP_0134	0.50	+0.2
142,467	-		PP_0134	0.50	-0.5
142,564	+		PP_0134	0.62	-0.6
142,564	+		PP_0134	0.62	+0.0
142,565	-		PP_0134	0.62	-1.5
142,565	-		PP_0134	0.62	+1.8
142,565	-		PP_0134	0.62	-0.4
142,691	-		PP_0134	0.77	+0.2
142,691	-		PP_0134	0.77	+2.1
142,921	-				-1.2
142,921	-				+0.9
142,921	-				-0.2
143,009	+				+0.7
143,157	-		PP_5428	0.36	-0.0
143,158	+		PP_5428	0.36	+0.2
143,158	+		PP_5428	0.36	+0.9
143,158	+		PP_5428	0.36	-1.1
143,158	+		PP_5428	0.36	+2.7
143,159	-		PP_5428	0.36	-0.2
143,161	+		PP_5428	0.37	+2.1
143,161	+		PP_5428	0.37	+1.7
143,161	+		PP_5428	0.37	+1.3
143,162	-		PP_5428	0.37	-2.1
143,162	-		PP_5428	0.37	-2.2
143,383	+				-0.6
143,383	+				+1.4
143,383	+				+1.0
143,384	-				+0.4
143,384	-				-0.4
143,384	-				-0.3
143,384	-				-1.1
143,436	+		PP_0135	0.30	+0.4
143,436	+		PP_0135	0.30	-0.5
143,437	-		PP_0135	0.31	+0.0
143,467	+		PP_0135	0.49	+0.0
143,467	+		PP_0135	0.49	+0.7
143,467	+		PP_0135	0.49	+1.0
143,468	-		PP_0135	0.50	+0.3
143,468	-		PP_0135	0.50	+0.3
143,468	-		PP_0135	0.50	-0.2
143,514	+		PP_0135	0.78	+1.4
143,515	-		PP_0135	0.79	+1.3
143,525	+		PP_0135	0.85	-0.1
143,788	+		PP_0136	0.50	+3.3
143,788	+		PP_0136	0.50	-0.1
143,788	+		PP_0136	0.50	+0.5
143,788	+		PP_0136	0.50	+0.7
143,788	+		PP_0136	0.50	-0.1
143,789	-		PP_0136	0.51	-0.6
143,789	-		PP_0136	0.51	-1.1
143,789	-		PP_0136	0.51	-0.0
143,789	-		PP_0136	0.51	-0.6
143,789	-		PP_0136	0.51	-1.0
143,789	-		PP_0136	0.51	-0.2
143,831	-		PP_0136	0.59	-1.2
143,831	-		PP_0136	0.59	+0.0
143,831	-		PP_0136	0.59	-0.6
143,831	-		PP_0136	0.59	-0.4
143,875	+		PP_0136	0.69	+2.3
144,017	-				-1.6
144,064	+				+1.7
144,065	-				-0.5
144,065	-				-0.0
144,067	+				+1.7
144,067	+				+1.4
144,068	-				+0.5
144,068	-				-1.4
144,068	-				-0.3
144,085	-				-0.1
144,086	+				+0.2
144,086	+				+1.8
144,087	-				-0.1
144,099	+				-0.2
144,099	+				+0.5
144,099	+				+1.1
144,099	+				-0.1
144,099	+				-0.1
144,100	-				-0.4
144,100	-				-1.3
144,100	-				+0.1
144,160	+				+0.1
144,161	-				+0.6
144,178	+				+0.8
144,178	+				+1.2
144,179	-				+0.2
144,202	+				+1.8
144,203	-				-2.1
144,262	-				+0.6
144,294	+				+0.9
144,295	-				-1.7
144,295	-				-0.5
144,295	-				+0.7
144,295	-				-0.0