Strain Fitness in Pseudomonas putida KT2440 around PP_5083

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
5,803,399	+		PP_5081	0.61	+0.7
5,803,435	+		PP_5081	0.64	+0.5
5,803,435	+		PP_5081	0.64	+0.4
5,803,436	-		PP_5081	0.64	+0.5
5,803,436	-		PP_5081	0.64	-0.9
5,803,526	+		PP_5081	0.73	-0.3
5,803,526	+		PP_5081	0.73	-1.1
5,803,567	+		PP_5081	0.77	+1.6
5,803,568	-		PP_5081	0.77	+0.3
5,803,568	-		PP_5081	0.77	+0.3
5,803,666	+		PP_5081	0.87	-0.9
5,803,666	+		PP_5081	0.87	+0.1
5,803,667	-		PP_5081	0.87	-0.2
5,803,968	-		PP_5082	0.32	+0.2
5,804,040	+		PP_5082	0.46	+0.4
5,804,040	+		PP_5082	0.46	-1.6
5,804,088	+		PP_5082	0.55	+0.1
5,804,089	-		PP_5082	0.55	-0.3
5,804,142	+		PP_5082	0.65	-0.2
5,804,142	+		PP_5082	0.65	+0.9
5,804,142	+		PP_5082	0.65	-0.0
5,804,142	+		PP_5082	0.65	-0.4
5,804,143	-		PP_5082	0.65	-1.8
5,804,143	-		PP_5082	0.65	+0.6
5,804,143	-		PP_5082	0.65	+2.2
5,804,143	-		PP_5082	0.65	+1.4
5,804,144	+		PP_5082	0.65	-2.3
5,804,144	+		PP_5082	0.65	-0.5
5,804,144	+		PP_5082	0.65	+0.6
5,804,144	+		PP_5082	0.65	+1.2
5,804,145	-		PP_5082	0.65	+0.1
5,804,145	-		PP_5082	0.65	+1.9
5,804,145	-		PP_5082	0.65	-1.1
5,804,145	-		PP_5082	0.65	-1.3
5,804,412	+				-0.1
5,804,413	-				+0.6
5,804,450	+		PP_5083	0.14	+1.0
5,804,519	+		PP_5083	0.22	+1.1
5,804,790	-		PP_5083	0.52	+0.3
5,804,950	+		PP_5083	0.71	+1.0
5,805,158	-				+0.4
5,805,230	+				+2.2
5,805,230	+				-1.1
5,805,341	+				-0.4
5,805,341	+				-0.1
5,805,342	-				-1.9
5,805,343	+				+0.6
5,805,343	+				-2.5
5,805,343	+				+0.5
5,805,343	+				+0.3
5,805,343	+				-1.1
5,805,343	+				+0.7
5,805,344	-				-0.2
5,805,344	-				-0.4
5,805,344	-				+1.5
5,805,416	+				+0.7
5,805,417	-				+0.7
5,805,417	-				+1.6
5,805,417	-				+0.4
5,805,417	-				+1.1
5,805,417	-				+1.8
5,805,471	-				+1.2
5,805,496	+				-0.4
5,805,497	-				+0.5
5,805,497	-				-1.0
5,805,501	+				-0.7
5,805,566	-				+0.6
5,805,566	-				+1.6
5,805,753	+		PP_5084	0.14	+1.6
5,805,935	-		PP_5084	0.21	+1.2
5,805,935	-		PP_5084	0.21	-0.4
5,805,961	+		PP_5084	0.22	-0.4
5,805,961	+		PP_5084	0.22	+0.6
5,805,961	+		PP_5084	0.22	+0.2
5,805,961	+		PP_5084	0.22	+2.1
5,805,962	-		PP_5084	0.22	+0.8
5,806,102	+		PP_5084	0.28	-0.9
5,806,102	+		PP_5084	0.28	-1.2
5,806,102	+		PP_5084	0.28	+0.8
5,806,102	+		PP_5084	0.28	+0.1
5,806,102	+		PP_5084	0.28	+0.6
5,806,103	-		PP_5084	0.28	-0.9
5,806,103	-		PP_5084	0.28	+0.2
5,806,103	-		PP_5084	0.28	+0.3
5,806,103	-		PP_5084	0.28	+0.5
5,806,103	-		PP_5084	0.28	+0.7
5,806,133	-		PP_5084	0.29	-0.8
5,806,168	+		PP_5084	0.31	+0.5
5,806,168	+		PP_5084	0.31	+3.1
5,806,169	-		PP_5084	0.31	-0.1
5,806,169	-		PP_5084	0.31	-0.5
5,806,201	+				+1.6
5,806,201	+		PP_5084	0.32	+0.1