Strain Fitness in Pseudomonas putida KT2440 around PP_4817

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
5,478,023	+		PP_4815	0.31	+0.0
5,478,204	-		PP_4815	0.56	-0.0
5,478,204	-		PP_4815	0.56	-0.8
5,478,207	-		PP_4815	0.57	-0.6
5,478,207	-		PP_4815	0.57	+0.3
5,478,212	+		PP_4815	0.58	-0.6
5,478,213	-		PP_4815	0.58	-1.2
5,478,245	+		PP_4815	0.62	-0.9
5,478,250	+		PP_4815	0.63	-3.0
5,478,251	-		PP_4815	0.63	-0.6
5,478,375	+		PP_4815	0.80	-1.2
5,478,381	+		PP_4815	0.81	+1.0
5,478,416	-		PP_4815	0.86	-1.9
5,478,429	+		PP_4815	0.88	-0.1
5,478,429	+		PP_4815	0.88	-0.3
5,478,430	-		PP_4815	0.88	+0.3
5,478,436	+		PP_4815	0.89	+1.0
5,478,436	+		PP_4815	0.89	+0.1
5,478,648	+		PP_4816	0.37	+0.6
5,478,648	+		PP_4816	0.37	+0.4
5,478,648	+		PP_4816	0.37	+1.5
5,478,648	+		PP_4816	0.37	+0.0
5,478,649	-		PP_4816	0.37	-2.1
5,478,649	-		PP_4816	0.37	-0.1
5,478,649	-		PP_4816	0.37	+0.3
5,478,650	+		PP_4816	0.37	-0.6
5,478,650	+		PP_4816	0.37	+2.0
5,478,650	+		PP_4816	0.37	-0.9
5,478,650	+		PP_4816	0.37	-0.4
5,478,650	+		PP_4816	0.37	+0.2
5,478,650	+		PP_4816	0.37	+1.0
5,478,651	-		PP_4816	0.38	+1.1
5,478,651	-		PP_4816	0.38	+0.3
5,478,651	-		PP_4816	0.38	+0.5
5,478,794	+		PP_4816	0.76	-1.0
5,478,874	+				-1.4
5,478,874	+				+1.1
5,478,874	+				-0.2
5,478,874	+				+1.5
5,478,874	+				+0.9
5,478,874	+				-1.6
5,478,875	-				+1.5
5,478,875	-				-1.2
5,478,875	-				+0.1
5,478,875	-				-0.8
5,478,903	+				+1.0
5,478,903	+				+0.8
5,478,903	+				+0.4
5,478,904	-				+0.7
5,478,904	-				-1.2
5,478,904	-				-0.3
5,478,905	+				+1.0
5,478,905	+				-0.0
5,478,905	+				+2.3
5,478,905	+				-0.8
5,478,906	-				-0.5
5,478,906	-				-0.4
5,478,906	-				-1.0
5,478,906	-				-1.2
5,478,906	-				-0.6
5,478,906	-				-1.0
5,478,906	-				-0.9
5,478,982	+				-0.1
5,478,991	-				-0.1
5,479,028	+				+0.3
5,479,029	-				-0.5
5,479,029	-				+0.5
5,479,035	+				-0.9
5,479,051	+				-0.5
5,479,052	-				-0.8
5,479,282	+		PP_4817	0.58	+0.4
5,479,283	-		PP_4817	0.58	+0.1
5,479,346	+		PP_4817	0.72	+0.7
5,479,346	+		PP_4817	0.72	-0.3
5,479,347	-		PP_4817	0.72	-1.3
5,479,347	-		PP_4817	0.72	+1.0
5,479,347	-		PP_4817	0.72	+1.0
5,479,438	+				+1.3
5,479,438	+				+0.2
5,479,438	+				+0.9
5,479,438	+				+0.1
5,479,438	+				-0.2
5,479,438	+				+0.4
5,479,439	-				-0.0
5,479,439	-				-1.0
5,479,439	-				+0.2
5,479,439	-				+2.1
5,479,439	-				-0.3
5,479,439	-				-0.6
5,479,439	-				+0.1
5,479,439	-				+0.2
5,479,439	-				-1.4
5,479,440	+				-0.0
5,479,440	+				+0.0
5,479,440	+				+0.8
5,479,440	+				+0.7
5,479,441	-				-0.2
5,479,441	-				+0.5
5,479,442	+				+0.5
5,479,443	-				-0.2
5,479,443	-				-0.9
5,479,474	+				-0.5
5,479,474	+				+2.5
5,479,474	+				+0.0
5,479,475	-				+0.4
5,479,475	-				-1.5
5,479,475	-				+2.2
5,479,475	-				-0.4
5,479,475	-				+1.0
5,479,475	-				+0.5
5,479,475	-				-0.5
5,479,574	+				-0.3
5,479,575	-				+1.0
5,479,575	-				-0.2
5,479,607	+		PP_4818	0.13	-1.3
5,479,642	+		PP_4818	0.17	-0.1
5,479,642	+		PP_4818	0.17	-1.0
5,479,643	-		PP_4818	0.17	+1.0
5,479,646	+		PP_4818	0.17	-1.6
5,479,664	+		PP_4818	0.19	-0.9
5,480,142	-		PP_4818	0.67	+2.0
5,480,227	+		PP_4818	0.76	-0.5
5,480,228	-		PP_4818	0.76	-0.1
5,480,396	-				-0.3