Strain Fitness in Pseudomonas putida KT2440 around PP_3547

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
4,020,597	-		PP_3546	0.63	-0.3
4,020,597	-		PP_3546	0.63	+0.3
4,020,835	+		PP_3546	0.75	+0.3
4,020,835	+		PP_3546	0.75	-0.1
4,020,835	+		PP_3546	0.75	-1.0
4,020,835	+		PP_3546	0.75	-0.1
4,020,835	+		PP_3546	0.75	+0.2
4,020,836	-		PP_3546	0.75	+0.3
4,020,836	-		PP_3546	0.75	-0.2
4,021,284	+				+0.1
4,021,285	-				-0.0
4,021,285	-				-0.1
4,021,285	-				+1.5
4,021,285	-				-0.2
4,021,404	+				-0.5
4,021,404	+				-0.5
4,021,404	+				+1.4
4,021,543	+		PP_3547	0.19	-0.7
4,021,543	+		PP_3547	0.19	-1.2
4,021,543	+		PP_3547	0.19	-1.9
4,021,544	-		PP_3547	0.19	+0.2
4,021,545	+		PP_3547	0.19	-0.6
4,021,545	+		PP_3547	0.19	+1.3
4,021,545	+		PP_3547	0.19	-0.1
4,021,545	+		PP_3547	0.19	+1.9
4,021,545	+		PP_3547	0.19	-0.1
4,021,545	+		PP_3547	0.19	-0.2
4,021,546	-		PP_3547	0.19	-0.7
4,021,546	-		PP_3547	0.19	-0.6
4,021,556	+		PP_3547	0.20	-0.4
4,021,641	+		PP_3547	0.29	-0.0
4,021,641	+		PP_3547	0.29	+0.3
4,021,642	-		PP_3547	0.30	-1.2
4,021,650	+		PP_3547	0.30	-0.2
4,021,650	+		PP_3547	0.30	+0.1
4,021,650	+		PP_3547	0.30	-1.2
4,021,651	-		PP_3547	0.30	-0.3
4,021,688	+		PP_3547	0.34	-0.6
4,021,688	+		PP_3547	0.34	+0.7
4,021,689	-		PP_3547	0.35	+0.2
4,022,014	-		PP_3547	0.69	+0.5
4,022,014	-		PP_3547	0.69	+1.2
4,022,148	+		PP_3547	0.83	+0.5
4,022,148	+		PP_3547	0.83	+0.4
4,022,148	+		PP_3547	0.83	-0.9
4,022,148	+		PP_3547	0.83	+0.1
4,022,602	+				+0.8
4,022,602	+				+1.4
4,022,602	+				+0.0
4,022,876	+				-0.4
4,022,887	+				+2.5
4,023,009	-				+0.2
4,023,077	-				-1.5
4,023,077	-				+1.0
4,023,097	+				+1.3
4,023,097	+				+0.2
4,023,097	+				+0.0
4,023,097	+				+1.3
4,023,098	-				+1.2
4,023,098	-				+3.5
4,023,098	-				+0.0
4,023,098	-				+0.2
4,023,098	-				-0.0
4,023,115	-				-0.5
4,023,134	-		PP_3548	0.10	+0.1
4,023,134	-		PP_3548	0.10	+0.8
4,023,134	-		PP_3548	0.10	-0.9
4,023,170	+		PP_3548	0.13	-0.1
4,023,171	-		PP_3548	0.13	-0.2
4,023,214	+		PP_3548	0.16	+0.6
4,023,215	-		PP_3548	0.16	-0.7
4,023,215	-		PP_3548	0.16	-0.9
4,023,215	-		PP_3548	0.16	-0.4