Strain Fitness in Pseudomonas putida KT2440 around PP_3488

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,950,910	+				+0.9
3,951,051	+				-0.4
3,951,052	-				-0.3
3,951,228	+				+0.3
3,951,387	-		PP_3487	0.23	+0.2
3,951,387	-		PP_3487	0.23	-0.1
3,951,387	-		PP_3487	0.23	+0.1
3,951,661	+		PP_3487	0.65	+1.0
3,951,941	+				-0.8
3,951,942	-				-0.4
3,952,002	+		PP_3488	0.17	-0.7
3,952,003	-		PP_3488	0.17	+0.4
3,952,005	+		PP_3488	0.17	-1.0
3,952,005	+		PP_3488	0.17	+0.3
3,952,043	+		PP_3488	0.23	-0.6
3,952,043	+		PP_3488	0.23	+0.7
3,952,043	+		PP_3488	0.23	-0.1
3,952,168	-		PP_3488	0.42	+0.2
3,952,296	-		PP_3488	0.61	+1.8
3,952,296	-		PP_3488	0.61	+0.8
3,952,668	-				+0.4
3,952,707	-				+0.1
3,952,707	-				-0.1
3,952,770	-		PP_5606	0.11	+0.4
3,952,824	+		PP_5606	0.14	-0.4
3,952,824	+		PP_5606	0.14	-0.0
3,952,824	+		PP_5606	0.14	+0.3
3,952,952	-		PP_5606	0.21	-0.7
3,953,021	+		PP_5606	0.24	+0.8
3,953,021	+		PP_5606	0.24	+1.2
3,953,022	-		PP_5606	0.24	+0.1
3,953,022	-		PP_5606	0.24	+0.3
3,953,096	+		PP_5606	0.28	-0.5
3,953,129	+		PP_5606	0.29	-1.7
3,953,129	+		PP_5606	0.29	+0.3
3,953,135	+		PP_5606	0.30	+0.5
3,953,135	+		PP_5606	0.30	+0.1
3,953,136	-		PP_5606	0.30	-1.4
3,953,136	-		PP_5606	0.30	+0.0
3,953,136	-		PP_5606	0.30	-0.6
3,953,336	+		PP_5606	0.40	+0.4
3,953,336	+		PP_5606	0.40	-0.0
3,953,336	+		PP_5606	0.40	+0.5
3,953,337	-		PP_5606	0.40	-0.5
3,953,337	-		PP_5606	0.40	-1.9
3,953,337	-		PP_5606	0.40	-1.4
3,953,337	-		PP_5606	0.40	-0.4
3,953,342	+		PP_5606	0.40	+0.1
3,953,445	+		PP_5606	0.45	+0.5
3,953,445	+		PP_5606	0.45	+0.8
3,953,445	+		PP_5606	0.45	-1.7