Strain Fitness in Pseudomonas putida KT2440 around PP_3400

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,851,651	+		PP_3399	0.44	-0.9
3,851,741	+		PP_3399	0.51	+0.5
3,851,742	-		PP_3399	0.51	-0.0
3,851,742	-		PP_3399	0.51	-0.1
3,851,743	+		PP_3399	0.51	+0.2
3,851,886	-		PP_3399	0.61	-0.3
3,851,935	+		PP_3399	0.64	+0.6
3,851,935	+		PP_3399	0.64	-0.7
3,851,935	+		PP_3399	0.64	-0.9
3,851,936	-		PP_3399	0.64	-0.7
3,852,137	+		PP_3399	0.78	-1.0
3,852,137	+		PP_3399	0.78	+0.6
3,852,137	+		PP_3399	0.78	+0.3
3,852,137	+		PP_3399	0.78	+0.7
3,852,197	+		PP_3399	0.82	+0.8
3,852,197	+		PP_3399	0.82	+0.8
3,852,197	+		PP_3399	0.82	+0.2
3,852,197	+		PP_3399	0.82	-0.3
3,852,197	+		PP_3399	0.82	-0.6
3,852,198	-		PP_3399	0.82	+4.7
3,852,198	-		PP_3399	0.82	-0.1
3,852,198	-		PP_3399	0.82	-0.4
3,852,198	-		PP_3399	0.82	+0.4
3,852,198	-		PP_3399	0.82	+0.4
3,852,198	-		PP_3399	0.82	-0.6
3,852,198	-		PP_3399	0.82	-1.2
3,852,204	-		PP_3399	0.83	-0.3
3,852,254	+		PP_3399	0.86	+0.6
3,852,256	+		PP_3399	0.86	+0.6
3,852,256	+		PP_3399	0.86	+2.2
3,852,257	-		PP_3399	0.86	-0.7
3,852,257	-		PP_3399	0.86	+0.4
3,852,257	-		PP_3399	0.86	+0.1
3,852,257	-		PP_3399	0.86	-0.6
3,852,269	+		PP_3399	0.87	+0.6
3,852,269	+		PP_3399	0.87	-0.4
3,852,269	+		PP_3399	0.87	+0.2
3,852,270	-		PP_3399	0.87	-0.8
3,852,284	+		PP_3399	0.88	-0.9
3,852,285	-		PP_3399	0.88	+1.2
3,852,339	-				+0.9
3,852,568	+				-0.7
3,852,568	+				+0.1
3,852,569	-				-0.5
3,852,569	-				+0.6
3,852,569	-				-0.0
3,852,569	-				+0.0
3,852,569	-				-0.1
3,852,763	+		PP_3400	0.23	+0.2
3,852,763	+		PP_3400	0.23	+1.9
3,852,763	+		PP_3400	0.23	+0.0
3,852,764	-		PP_3400	0.23	-0.9
3,852,764	-		PP_3400	0.23	+0.4
3,852,764	-		PP_3400	0.23	-1.9
3,852,764	-		PP_3400	0.23	-1.5
3,852,764	-		PP_3400	0.23	+1.2
3,852,764	-		PP_3400	0.23	+0.9
3,853,064	+		PP_3400	0.70	-0.0
3,853,158	-		PP_3400	0.84	+1.0
3,853,185	-		PP_3400	0.88	+1.5
3,853,349	+				+1.9
3,853,350	-				-0.6
3,853,350	-				-0.2
3,853,367	+				+0.4
3,853,367	+				-0.8
3,853,367	+				-0.1
3,853,368	-				-0.3
3,853,413	-				-0.8
3,853,413	-				-0.7
3,853,425	+				+0.1
3,853,425	+				-0.6
3,853,426	-				+1.9
3,853,426	-				-0.3
3,853,426	-				+1.9
3,853,426	-				+0.4
3,853,433	+				+0.4
3,853,475	+		PP_3401	0.16	-1.2
3,853,475	+		PP_3401	0.16	+0.7
3,853,476	-		PP_3401	0.16	+0.5
3,853,476	-		PP_3401	0.16	-0.7
3,853,646	+		PP_3401	0.75	+0.3
3,853,647	-		PP_3401	0.75	+0.0
3,853,715	+				-0.7
3,853,716	-				-1.3
3,853,716	-				-1.7
3,853,716	-				+0.4
3,853,756	+				-0.3
3,853,756	+				-0.7
3,853,756	+				+0.2
3,853,757	-				-0.4
3,853,757	-				+0.4
3,853,757	-				+0.2
3,853,757	-				-0.2
3,853,757	-				-0.3
3,853,832	-				+0.1
3,853,832	-				-0.1
3,854,033	+		PP_3402	0.59	-1.2
3,854,033	+		PP_3402	0.59	-1.9
3,854,033	+		PP_3402	0.59	-0.3
3,854,034	-		PP_3402	0.59	-1.8
3,854,039	-		PP_3402	0.61	+0.4
3,854,062	+		PP_3402	0.66	+1.0
3,854,062	+		PP_3402	0.66	+0.5
3,854,062	+		PP_3402	0.66	+0.0
3,854,062	+		PP_3402	0.66	+0.3
3,854,063	-		PP_3402	0.67	+1.3
3,854,091	+		PP_3402	0.74	+0.0
3,854,091	+		PP_3402	0.74	-0.0
3,854,091	+		PP_3402	0.74	-0.1
3,854,091	+		PP_3402	0.74	-0.5
3,854,092	-		PP_3402	0.74	-0.9
3,854,092	-		PP_3402	0.74	-0.3
3,854,092	-		PP_3402	0.74	-0.3
3,854,129	+		PP_3402	0.83	+0.9
3,854,130	-		PP_3402	0.84	+0.1
3,854,130	-		PP_3402	0.84	+1.1
3,854,189	+				+2.0
3,854,189	+				+0.2
3,854,190	-				+0.2
3,854,190	-				-0.5
3,854,198	-				+0.2
3,854,238	+				+0.9
3,854,238	+				+1.2
3,854,238	+				+1.9
3,854,239	-				+0.8
3,854,239	-				-0.5
3,854,239	-				+0.6
3,854,239	-				+0.4
3,854,247	+				+0.6