Strain Fitness in Pseudomonas putida KT2440 around PP_3311

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,746,119	+		PP_3310	0.63	-0.4
3,746,119	+		PP_3310	0.63	+0.7
3,746,120	-		PP_3310	0.63	+0.7
3,746,120	-		PP_3310	0.63	-0.7
3,746,122	-		PP_3310	0.63	+0.3
3,746,122	-		PP_3310	0.63	+1.8
3,746,232	+		PP_3310	0.68	+0.7
3,746,233	-		PP_3310	0.68	+1.1
3,746,276	+		PP_3310	0.70	+2.4
3,746,315	-		PP_3310	0.72	+0.3
3,746,546	+		PP_3310	0.83	+1.0
3,746,550	-		PP_3310	0.83	-0.4
3,746,582	+		PP_3310	0.84	-0.1
3,746,582	+		PP_3310	0.84	-1.2
3,746,583	-		PP_3310	0.84	-0.3
3,746,583	-		PP_3310	0.84	-1.2
3,746,711	-				+0.5
3,746,711	-				+0.1
3,746,750	+				+0.5
3,746,854	+				+0.6
3,746,854	+				+0.2
3,746,854	+				+0.2
3,746,855	-				+0.1
3,746,855	-				+0.4
3,746,927	+				+0.8
3,746,927	+				-0.3
3,746,928	-				-0.5
3,746,928	-				-1.4
3,746,933	+				-0.6
3,746,933	+				-0.1
3,746,934	-				+0.5
3,746,934	-				-2.5
3,746,934	-				-0.5
3,746,936	+				+0.2
3,746,937	-				+0.4
3,746,937	-				+1.8
3,746,937	-				+0.3
3,746,937	-				+1.8
3,746,937	-				-2.4
3,747,208	+		PP_3311	0.11	-2.0
3,747,208	+		PP_3311	0.11	+0.9
3,747,208	+		PP_3311	0.11	+0.2
3,747,209	-		PP_3311	0.11	-1.6
3,747,287	-		PP_3311	0.16	-0.0
3,747,287	-		PP_3311	0.16	-2.6
3,747,532	-		PP_3311	0.30	-0.1
3,747,540	+		PP_3311	0.30	+0.6
3,747,540	+				+0.2
3,747,540	+				-1.2
3,747,540	+		PP_3311	0.30	-0.2
3,747,541	-		PP_3311	0.30	-0.6
3,747,541	-		PP_3311	0.30	-1.0
3,747,811	+		PP_3311	0.46	+0.3
3,747,812	-		PP_3311	0.46	-0.1
3,747,812	-		PP_3311	0.46	-0.7
3,747,930	+		PP_3311	0.52	-0.8
3,747,931	-		PP_3311	0.52	-0.9
3,747,931	-		PP_3311	0.52	-0.2
3,747,951	+		PP_3311	0.54	-1.4
3,747,951	+		PP_3311	0.54	-0.3
3,747,952	-		PP_3311	0.54	+0.8
3,747,952	-		PP_3311	0.54	-1.0
3,747,952	-		PP_3311	0.54	+0.2
3,748,062	+		PP_3311	0.60	+0.4
3,748,062	+		PP_3311	0.60	+1.6
3,748,063	-		PP_3311	0.60	-1.2
3,748,063	-		PP_3311	0.60	-0.5
3,748,063	-		PP_3311	0.60	+0.3
3,748,159	-		PP_3311	0.66	-0.5
3,748,273	-		PP_3311	0.72	-0.8
3,748,380	+		PP_3311	0.78	-0.8
3,748,381	-		PP_3311	0.78	-0.5
3,748,556	+		PP_3311	0.88	-1.0
3,748,556	+		PP_3311	0.88	-1.2
3,748,557	-		PP_3311	0.88	-0.3
3,748,649	-				+1.8
3,748,816	+				+0.0
3,748,852	+				-0.5
3,748,932	+				+0.4
3,748,933	-				+2.0
3,748,933	-				+0.9
3,748,933	-				+0.5
3,748,933	-				+2.4
3,748,933	-				+0.1
3,749,177	-		PP_3312	0.57	+0.4
3,749,223	-		PP_3312	0.69	+0.6
3,749,447	+				-1.9
3,749,447	+				-1.5
3,749,564	-		PP_3313	0.21	-0.2
3,749,645	+		PP_3313	0.43	-1.6