Strain Fitness in Pseudomonas putida KT2440 around PP_2821

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,218,463	-		PP_2819	0.89	+1.3
3,218,493	-				+1.0
3,218,516	+				-0.9
3,218,516	+				+0.2
3,218,516	+				+0.3
3,218,516	+				+0.9
3,218,517	-				-0.4
3,218,803	+		PP_2820	0.18	-1.4
3,218,804	-		PP_2820	0.19	-1.6
3,218,804	-		PP_2820	0.19	-0.4
3,218,804	-		PP_2820	0.19	+0.0
3,219,092	-		PP_2820	0.70	+0.0
3,219,277	+				+0.0
3,219,311	-				+1.1
3,219,331	+				-0.9
3,219,488	+		PP_2821	0.13	-0.5
3,219,490	+		PP_2821	0.14	+1.2
3,219,490	+		PP_2821	0.14	+2.6
3,219,491	-		PP_2821	0.14	+0.1
3,219,596	-		PP_2821	0.40	+0.0
3,219,638	-		PP_2821	0.50	+1.2
3,219,708	+		PP_2821	0.67	+0.6
3,219,708	+		PP_2821	0.67	+0.5
3,219,708	+		PP_2821	0.67	+0.2
3,219,709	-		PP_2821	0.68	+1.6
3,219,709	-		PP_2821	0.68	+0.1
3,219,852	+				+1.1
3,219,852	+				+0.1
3,219,894	+				-0.9
3,219,894	+				+0.4
3,219,895	-				+0.3
3,219,895	-				-0.8
3,220,053	+		PP_5539	0.17	-0.4
3,220,053	+		PP_5539	0.17	+0.3
3,220,065	+		PP_5539	0.18	-1.2
3,220,110	+		PP_5539	0.22	+0.2
3,220,110	+		PP_5539	0.22	-0.6
3,220,111	-		PP_5539	0.22	+0.3
3,220,114	+		PP_5539	0.23	-0.3
3,220,115	-		PP_5539	0.23	+0.4
3,220,115	-		PP_5539	0.23	-0.1
3,220,158	+		PP_5539	0.26	-0.6
3,220,159	-		PP_5539	0.27	+0.5
3,220,159	-		PP_5539	0.27	+0.4
3,220,159	-		PP_5539	0.27	+0.0
3,220,243	-		PP_5539	0.34	+0.7
3,220,395	+		PP_5539	0.47	+0.6
3,220,446	+		PP_5539	0.51	+0.2
3,220,536	+		PP_5539	0.59	+0.8
3,220,536	+		PP_5539	0.59	-1.0
3,220,536	+		PP_5539	0.59	+0.2
3,220,557	+		PP_5539	0.61	+0.6
3,220,558	-		PP_5539	0.61	+0.2
3,220,581	+		PP_5539	0.63	-0.9
3,220,641	+		PP_5539	0.68	-0.6
3,220,641	+		PP_5539	0.68	-2.0
3,220,647	+		PP_5539	0.69	+0.6
3,220,648	-		PP_5539	0.69	+0.4
3,220,648	-		PP_5539	0.69	-1.6
3,220,648	-		PP_5539	0.69	+0.1
3,220,648	-		PP_5539	0.69	+0.1
3,220,710	+		PP_5539	0.74	-0.4
3,220,710	+		PP_5539	0.74	+2.3
3,220,710	+		PP_5539	0.74	+0.0
3,220,711	-		PP_5539	0.74	+1.6