Strain Fitness in Pseudomonas putida KT2440 around PP_2653

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,040,218	+				-0.4
3,040,218	+				-0.7
3,040,218	+				+0.4
3,040,218	+				-1.0
3,040,219	-				+0.5
3,040,219	-				+0.2
3,040,219	-				+0.7
3,040,356	+				-0.9
3,040,356	+				-1.0
3,040,357	-				+0.5
3,040,442	-				+1.4
3,040,442	-				+0.3
3,040,518	+		PP_2652	0.15	+0.2
3,040,518	+		PP_2652	0.15	-3.1
3,040,673	+		PP_2652	0.35	+1.3
3,040,673	+		PP_2652	0.35	-1.0
3,040,674	-		PP_2652	0.35	-0.8
3,040,674	-		PP_2652	0.35	+0.2
3,040,778	+		PP_2652	0.48	-0.8
3,040,915	+		PP_2652	0.66	+0.4
3,040,915	+		PP_2652	0.66	-0.7
3,040,915	+		PP_2652	0.66	-0.3
3,040,915	+		PP_2652	0.66	-1.0
3,040,916	-		PP_2652	0.66	+1.6
3,040,916	-		PP_2652	0.66	-0.8
3,040,916	-		PP_2652	0.66	-1.9
3,040,916	-		PP_2652	0.66	+0.3
3,040,916	-		PP_2652	0.66	-0.8
3,041,037	+				+1.6
3,041,038	-		PP_2652	0.81	-1.8
3,041,038	-		PP_2652	0.81	-0.6
3,041,174	+				+0.3
3,041,181	+				+0.3
3,041,182	-				+1.3
3,041,182	-				-2.2
3,041,330	+		PP_2653	0.19	+0.8
3,041,670	+		PP_2653	0.61	+2.0
3,041,671	-		PP_2653	0.61	-0.1
3,041,685	+		PP_2653	0.63	-0.3
3,041,686	-		PP_2653	0.63	+0.9
3,042,059	-				+0.7
3,042,064	+				-0.8
3,042,065	-				-0.2
3,042,095	+				+0.3
3,042,095	+				-0.0
3,042,095	+				+2.6
3,042,095	+				-0.6
3,042,095	+				-0.4
3,042,095	+				+0.6
3,042,096	-				-0.0
3,042,096	-				-0.2
3,042,097	+				+1.2
3,042,098	-				-0.6
3,042,126	+				-0.3
3,042,147	-		PP_5537	0.16	-0.4
3,042,326	+		PP_5537	0.72	-0.0
3,042,326	+		PP_5537	0.72	-1.1
3,042,371	+		PP_5537	0.87	+0.6
3,042,372	-		PP_5537	0.87	-0.3
3,042,431	-				-2.0
3,042,581	+		PP_2654	0.40	+1.0
3,042,582	-		PP_2654	0.41	-0.9
3,042,582	-		PP_2654	0.41	+0.3
3,042,582	-		PP_2654	0.41	+0.4
3,042,596	+		PP_2654	0.44	-0.1
3,042,597	-		PP_2654	0.44	+1.0
3,042,683	+		PP_2654	0.64	+0.1
3,042,683	+		PP_2654	0.64	+0.4
3,042,684	-		PP_2654	0.65	-0.4
3,042,684	-		PP_2654	0.65	-0.8
3,042,684	-		PP_2654	0.65	+0.1
3,042,734	-		PP_2654	0.76	-0.6
3,042,734	-		PP_2654	0.76	-0.4
3,042,769	+		PP_2654	0.85	-0.2
3,042,872	+				-0.0
3,042,878	+				-1.2
3,042,878	+				-0.3
3,042,881	+				+0.5
3,042,888	+				+0.5
3,042,963	+		PP_2655	0.24	-0.8
3,042,964	-		PP_2655	0.25	+1.2
3,042,964	-		PP_2655	0.25	+0.9