Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2579 and PP_2580 are separated by 211 nucleotides PP_2580 and PP_2581 are separated by 229 nucleotides PP_2581 and PP_2582 are separated by 25 nucleotides PP_2582 and PP_2583 are separated by 93 nucleotides
PP_2579: PP_2579 - putative phosphoethanolamine transferase CptA, at 2,945,767 to 2,947,521
_2579
PP_2580: PP_2580 - conserved protein of unknown function, at 2,947,733 to 2,947,888
_2580
PP_2581: PP_2581 - conserved protein of unknown function, at 2,948,118 to 2,948,465
_2581
PP_2582: PP_2582 - putative Heme oxygenase, at 2,948,491 to 2,949,081
_2582
PP_2583: PP_2583 - Acetyltransferase, GNAT family, at 2,949,175 to 2,949,735
_2583
Position (kb)
2948
2949 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2947.128 kb on - strand, within PP_2579 at 2947.244 kb on + strand, within PP_2579 at 2947.244 kb on + strand, within PP_2579 at 2947.244 kb on + strand, within PP_2579 at 2947.256 kb on + strand, within PP_2579 at 2947.257 kb on - strand, within PP_2579 at 2947.442 kb on + strand at 2947.442 kb on + strand at 2947.509 kb on + strand at 2947.510 kb on - strand at 2947.510 kb on - strand at 2947.510 kb on - strand at 2947.510 kb on - strand at 2947.523 kb on + strand at 2947.523 kb on + strand at 2947.523 kb on + strand at 2947.524 kb on - strand at 2947.524 kb on - strand at 2947.524 kb on - strand at 2947.524 kb on - strand at 2947.524 kb on - strand at 2947.584 kb on - strand at 2947.642 kb on - strand at 2947.642 kb on - strand at 2947.650 kb on + strand at 2947.714 kb on - strand at 2947.744 kb on + strand at 2947.744 kb on + strand at 2947.762 kb on - strand, within PP_2580 at 2947.762 kb on - strand, within PP_2580 at 2947.817 kb on + strand, within PP_2580 at 2947.817 kb on + strand, within PP_2580 at 2947.927 kb on + strand at 2947.927 kb on + strand at 2947.930 kb on + strand at 2947.930 kb on + strand at 2947.930 kb on + strand at 2947.930 kb on + strand at 2947.931 kb on - strand at 2948.284 kb on - strand, within PP_2581 at 2948.388 kb on + strand, within PP_2581 at 2948.431 kb on - strand at 2948.506 kb on + strand at 2948.507 kb on - strand at 2948.557 kb on + strand, within PP_2582 at 2948.745 kb on - strand, within PP_2582 at 2948.897 kb on + strand, within PP_2582 at 2948.897 kb on + strand, within PP_2582 at 2948.898 kb on - strand, within PP_2582 at 2948.952 kb on - strand, within PP_2582 at 2949.070 kb on + strand at 2949.100 kb on - strand at 2949.100 kb on - strand at 2949.203 kb on + strand at 2949.204 kb on - strand at 2949.204 kb on - strand at 2949.221 kb on + strand at 2949.221 kb on + strand at 2949.222 kb on - strand at 2949.236 kb on + strand, within PP_2583 at 2949.237 kb on - strand, within PP_2583 at 2949.295 kb on + strand, within PP_2583 at 2949.296 kb on - strand, within PP_2583 at 2949.296 kb on - strand, within PP_2583 at 2949.316 kb on + strand, within PP_2583 at 2949.317 kb on - strand, within PP_2583 at 2949.361 kb on - strand, within PP_2583
Per-strain Table
Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL remove 2,947,128 - PP_2579 0.78 -0.6 2,947,244 + PP_2579 0.84 -0.3 2,947,244 + PP_2579 0.84 -1.4 2,947,244 + PP_2579 0.84 +0.5 2,947,256 + PP_2579 0.85 -0.3 2,947,257 - PP_2579 0.85 -0.1 2,947,442 + +1.7 2,947,442 + -0.2 2,947,509 + -0.6 2,947,510 - -0.2 2,947,510 - -0.3 2,947,510 - -0.2 2,947,510 - -0.3 2,947,523 + +0.4 2,947,523 + +0.4 2,947,523 + -1.2 2,947,524 - -2.8 2,947,524 - +1.0 2,947,524 - -0.8 2,947,524 - +0.6 2,947,524 - -0.7 2,947,584 - +0.5 2,947,642 - +0.7 2,947,642 - -0.2 2,947,650 + -0.1 2,947,714 - +1.6 2,947,744 + +1.6 2,947,744 + -1.9 2,947,762 - PP_2580 0.19 +0.7 2,947,762 - PP_2580 0.19 +0.1 2,947,817 + PP_2580 0.54 +0.1 2,947,817 + PP_2580 0.54 -0.5 2,947,927 + -0.3 2,947,927 + +0.1 2,947,930 + +0.4 2,947,930 + -0.6 2,947,930 + +0.4 2,947,930 + +0.4 2,947,931 - +0.0 2,948,284 - PP_2581 0.48 +1.4 2,948,388 + PP_2581 0.78 +0.2 2,948,431 - -0.7 2,948,506 + +0.3 2,948,507 - -0.2 2,948,557 + PP_2582 0.11 -0.1 2,948,745 - PP_2582 0.43 +0.5 2,948,897 + PP_2582 0.69 -0.0 2,948,897 + PP_2582 0.69 +0.6 2,948,898 - PP_2582 0.69 -0.0 2,948,952 - PP_2582 0.78 +1.2 2,949,070 + +0.0 2,949,100 - -1.0 2,949,100 - +0.2 2,949,203 + +0.4 2,949,204 - -0.7 2,949,204 - +0.3 2,949,221 + +0.2 2,949,221 + +0.3 2,949,222 - -1.3 2,949,236 + PP_2583 0.11 -0.1 2,949,237 - PP_2583 0.11 +0.7 2,949,295 + PP_2583 0.21 -0.3 2,949,296 - PP_2583 0.22 +0.8 2,949,296 - PP_2583 0.22 +2.3 2,949,316 + PP_2583 0.25 -1.2 2,949,317 - PP_2583 0.25 +1.6 2,949,361 - PP_2583 0.33 -0.2
Or see this region's nucleotide sequence