Strain Fitness in Pseudomonas putida KT2440 around PP_2246

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
2,561,279	+		PP_2244	0.81	-0.1
2,561,280	-		PP_2244	0.81	-0.9
2,561,280	-		PP_2244	0.81	+0.4
2,561,370	+				-0.0
2,561,422	+				+0.1
2,561,422	+				-0.1
2,561,422	+				+0.0
2,561,422	+				-0.5
2,561,423	-				+0.5
2,561,423	-				-2.4
2,561,423	-				-2.1
2,561,430	+				-1.7
2,561,430	+				-1.4
2,561,431	-				-1.1
2,561,431	-				-1.0
2,561,431	-				+2.8
2,561,431	-				-1.7
2,561,435	+				-0.5
2,561,436	-				-0.7
2,561,436	-				+0.4
2,561,480	-				-0.1
2,561,480	-				-0.4
2,561,481	+				-2.3
2,561,494	-				-0.5
2,561,573	+				-0.2
2,561,574	-				+0.4
2,561,574	-				+2.4
2,561,574	-				-0.2
2,561,616	+		PP_2245	0.10	-0.8
2,561,616	+		PP_2245	0.10	-0.2
2,561,616	+		PP_2245	0.10	-0.3
2,561,616	+		PP_2245	0.10	+0.5
2,561,616	+		PP_2245	0.10	-1.4
2,561,617	-		PP_2245	0.10	-0.5
2,561,617	-		PP_2245	0.10	-0.8
2,561,617	-		PP_2245	0.10	-1.2
2,561,617	-		PP_2245	0.10	+0.5
2,561,644	-		PP_2245	0.15	-0.1
2,561,644	-		PP_2245	0.15	-1.1
2,561,838	+		PP_2245	0.48	-0.4
2,561,839	-		PP_2245	0.48	+0.3
2,561,839	-		PP_2245	0.48	-0.3
2,561,844	+		PP_2245	0.49	+0.0
2,561,844	+		PP_2245	0.49	+0.2
2,561,859	+		PP_2245	0.51	+1.4
2,561,988	+		PP_2245	0.73	-0.2
2,562,186	-				+1.1
2,562,186	-				+1.0
2,562,275	+				+0.8
2,562,275	+				-0.5
2,562,423	-		PP_2246	0.14	-1.9
2,562,423	-		PP_2246	0.14	+0.2
2,562,470	+		PP_2246	0.18	+0.9
2,562,470	+		PP_2246	0.18	+1.4
2,562,470	+		PP_2246	0.18	+0.3
2,562,470	+		PP_2246	0.18	+0.8
2,562,471	-				+1.8
2,562,531	-		PP_2246	0.24	+1.2
2,562,531	-		PP_2246	0.24	+0.9
2,562,531	-		PP_2246	0.24	+0.8
2,562,531	-		PP_2246	0.24	-0.2
2,562,531	-		PP_2246	0.24	-0.1
2,562,705	+		PP_2246	0.39	-0.4
2,562,706	-		PP_2246	0.39	+1.0
2,562,706	-		PP_2246	0.39	+0.2
2,562,791	+		PP_2246	0.46	+0.1
2,562,974	-		PP_2246	0.63	-0.3
2,563,014	-		PP_2246	0.66	+0.7
2,563,115	-		PP_2246	0.75	+1.0
2,563,115	-		PP_2246	0.75	-1.7
2,563,118	+		PP_2246	0.75	+0.4
2,563,118	+		PP_2246	0.75	-0.6
2,563,119	-		PP_2246	0.75	+0.6
2,563,679	+		PP_2247	0.71	+0.2
2,563,679	+		PP_2247	0.71	-1.7
2,563,679	+		PP_2247	0.71	-0.5
2,563,680	-		PP_2247	0.71	+0.2
2,563,680	-		PP_2247	0.71	+0.2
2,563,680	-		PP_2247	0.71	+0.3
2,563,809	-				+0.2
2,564,370	+		PP_2248	0.44	+1.1