Strain Fitness in Pseudomonas putida KT2440 around PP_1640

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
1,834,919	+				-0.0
1,834,919	+				-1.1
1,834,920	-				-1.4
1,834,965	+				-0.4
1,834,965	+				-0.2
1,834,966	-				-0.0
1,835,051	+				-0.8
1,835,051	+				+1.1
1,835,052	-				+0.1
1,835,090	-				+0.1
1,835,090	-				+0.2
1,835,122	+		PP_1639	0.12	+0.5
1,835,122	+		PP_1639	0.12	-0.6
1,835,123	-		PP_1639	0.12	+1.1
1,835,123	-		PP_1639	0.12	-2.6
1,835,197	+		PP_1639	0.27	-2.1
1,835,197	+		PP_1639	0.27	-0.4
1,835,198	-		PP_1639	0.27	-0.3
1,835,198	-		PP_1639	0.27	-0.5
1,835,203	+		PP_1639	0.28	-0.1
1,835,203	+		PP_1639	0.28	-1.3
1,835,204	-		PP_1639	0.28	+0.5
1,835,233	+		PP_1639	0.34	+1.6
1,835,233	+				+1.1
1,835,233	+		PP_1639	0.34	+0.1
1,835,234	-		PP_1639	0.34	+0.2
1,835,234	-		PP_1639	0.34	-0.6
1,835,234	-		PP_1639	0.34	-0.2
1,835,264	-		PP_1639	0.40	+1.1
1,835,264	-		PP_1639	0.40	+0.0
1,835,264	-		PP_1639	0.40	+0.2
1,835,264	-		PP_1639	0.40	+0.8
1,835,395	+		PP_1639	0.67	-0.2
1,835,416	-		PP_1639	0.71	+1.7
1,835,416	-		PP_1639	0.71	-1.7
1,835,522	-				-0.1
1,835,587	-				-0.6
1,835,587	-				-0.0
1,835,700	+				+0.6
1,835,700	+				+0.3
1,835,728	+				-0.3
1,835,729	-				+0.3
1,835,729	-				+0.9
1,835,759	+		PP_1640	0.12	+1.1
1,835,759	+		PP_1640	0.12	+1.6
1,835,760	-		PP_1640	0.12	+0.4
1,835,762	+		PP_1640	0.12	+1.0
1,835,763	-		PP_1640	0.12	+0.9
1,835,816	+		PP_1640	0.21	-1.4
1,835,816	+		PP_1640	0.21	+1.1
1,835,816	+		PP_1640	0.21	+0.1
1,835,817	-		PP_1640	0.21	-1.4
1,835,817	-		PP_1640	0.21	-3.0
1,835,817	-		PP_1640	0.21	-0.3
1,835,844	+		PP_1640	0.26	-0.1
1,835,844	+		PP_1640	0.26	+0.3
1,835,952	+				+2.1
1,835,952	+		PP_1640	0.44	+1.0
1,835,952	+		PP_1640	0.44	+0.2
1,835,953	-		PP_1640	0.44	+2.2
1,835,997	+		PP_1640	0.51	-1.5
1,835,998	-		PP_1640	0.51	-0.3
1,835,998	-				+1.1
1,835,998	-		PP_1640	0.51	+1.1
1,835,998	-		PP_1640	0.51	-1.2
1,836,061	-		PP_1640	0.62	+0.2
1,836,201	+		PP_1640	0.85	+1.5
1,836,201	+		PP_1640	0.85	-0.8
1,836,201	+		PP_1640	0.85	+1.2
1,836,202	-		PP_1640	0.85	-0.3
1,836,202	-		PP_1640	0.85	+1.8
1,836,202	-		PP_1640	0.85	-0.4
1,836,262	+				-0.9
1,836,328	+				+0.3
1,836,328	+				+2.7
1,836,338	-				-0.8
1,836,383	+				-1.6
1,836,383	+				-0.1
1,836,383	+				-0.7
1,836,384	-				+1.0
1,836,384	-				+0.0
1,836,384	-				-0.6
1,836,384	-				+0.2
1,836,393	+				+0.0
1,836,393	+				+0.6
1,836,393	+				+0.2
1,836,394	-				+0.5
1,836,395	+				-0.1
1,836,396	-				-0.1
1,836,396	-				+0.1
1,836,396	-				+0.3
1,836,396	-				+0.1
1,836,407	-				+0.8
1,836,410	+				+0.4
1,836,414	+				+0.1
1,836,415	-				+1.2
1,836,415	-				+0.4
1,836,415	-				+0.5
1,836,511	+				-1.3
1,836,628	+				-0.1
1,836,628	+				-0.8
1,836,688	+		PP_1641	0.16	-0.2
1,836,688	+		PP_1641	0.16	-0.3
1,836,689	-		PP_1641	0.16	+0.7
1,836,689	-		PP_1641	0.16	+0.1
1,836,689	-		PP_1641	0.16	+0.1
1,836,689	-		PP_1641	0.16	+0.6
1,836,689	-		PP_1641	0.16	+0.0
1,836,689	-		PP_1641	0.16	-0.4
1,836,794	+		PP_1641	0.29	+0.2
1,836,794	+		PP_1641	0.29	-1.2
1,836,795	-		PP_1641	0.29	+1.9
1,836,795	-		PP_1641	0.29	+0.5
1,836,795	-		PP_1641	0.29	+0.5
1,836,805	+		PP_1641	0.31	-0.3
1,836,829	+		PP_1641	0.33	+0.7
1,836,849	+		PP_1641	0.36	-0.7
1,836,849	+		PP_1641	0.36	+1.4
1,836,850	-		PP_1641	0.36	-0.4
1,836,850	-		PP_1641	0.36	-0.1
1,836,853	+		PP_1641	0.36	+0.5
1,836,854	-				+2.1
1,836,854	-		PP_1641	0.36	-0.7
1,836,863	+		PP_1641	0.38	+0.2
1,836,864	-		PP_1641	0.38	-0.2
1,836,931	+		PP_1641	0.46	+0.2
1,836,931	+		PP_1641	0.46	+1.4
1,836,931	+		PP_1641	0.46	-2.2
1,836,932	-		PP_1641	0.46	+0.2
1,837,100	-		PP_1641	0.66	-3.4
1,837,100	-		PP_1641	0.66	-0.2
1,837,100	-		PP_1641	0.66	-0.4