Strain Fitness in Pseudomonas putida KT2440 around PP_0206

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0205 and PP_0206 are separated by 62 nucleotidesPP_0206 and PP_0207 are separated by 119 nucleotides PP_0205: PP_0205 - putative Oxidoreductase, at 256,315 to 258,039 _0205 PP_0206: PP_0206 - Ferredoxin, 4Fe-4S, at 258,102 to 258,347 _0206 PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873 _0207 Position (kb) 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 257.141 kb on - strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.340 kb on + strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.341 kb on - strand, within PP_0205at 257.425 kb on + strand, within PP_0205at 257.426 kb on - strand, within PP_0205at 257.426 kb on - strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.461 kb on + strand, within PP_0205at 257.478 kb on + strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.629 kb on + strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.656 kb on + strand, within PP_0205at 257.854 kb on + strand, within PP_0205at 258.240 kb on - strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.442 kb on + strandat 258.443 kb on - strandat 258.444 kb on + strandat 258.537 kb on + strandat 258.538 kb on - strandat 258.538 kb on - strandat 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.908 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strandat 259.181 kb on + strand, within PP_0207at 259.181 kb on + strand, within PP_0207at 259.182 kb on - strand, within PP_0207at 259.203 kb on - strand, within PP_0207at 259.256 kb on + strand, within PP_0207at 259.257 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
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257,141 - PP_0205 0.48 +0.3
257,340 + PP_0205 0.59 -0.2
257,340 + PP_0205 0.59 +0.3
257,340 + PP_0205 0.59 +0.1
257,340 + PP_0205 0.59 -0.7
257,340 + PP_0205 0.59 -1.4
257,340 + PP_0205 0.59 -0.4
257,340 + PP_0205 0.59 +0.2
257,341 - PP_0205 0.59 +0.3
257,341 - PP_0205 0.59 +1.0
257,341 - PP_0205 0.59 +0.5
257,341 - PP_0205 0.59 -0.3
257,341 - PP_0205 0.59 +0.6
257,425 + PP_0205 0.64 -0.6
257,426 - PP_0205 0.64 +0.6
257,426 - PP_0205 0.64 -1.3
257,461 + PP_0205 0.66 +1.7
257,461 + PP_0205 0.66 +0.3
257,461 + PP_0205 0.66 +0.0
257,478 + PP_0205 0.67 +0.2
257,479 - PP_0205 0.67 -2.5
257,479 - PP_0205 0.67 +1.3
257,482 + PP_0205 0.68 +0.9
257,482 + PP_0205 0.68 -0.1
257,482 + PP_0205 0.68 +0.1
257,482 + PP_0205 0.68 +0.0
257,483 - PP_0205 0.68 +0.2
257,483 - PP_0205 0.68 +2.7
257,483 - PP_0205 0.68 +0.2
257,483 - PP_0205 0.68 +0.2
257,515 + PP_0205 0.70 +0.4
257,515 + PP_0205 0.70 -0.3
257,516 - PP_0205 0.70 -1.9
257,516 - PP_0205 0.70 +1.1
257,629 + PP_0205 0.76 +0.4
257,630 - PP_0205 0.76 -1.8
257,630 - PP_0205 0.76 -1.0
257,656 + PP_0205 0.78 -0.1
257,854 + PP_0205 0.89 -1.8
258,240 - PP_0206 0.56 +0.2
258,252 + PP_0206 0.61 +0.3
258,252 + PP_0206 0.61 +0.1
258,253 - PP_0206 0.61 +1.0
258,253 - PP_0206 0.61 +0.4
258,253 - PP_0206 0.61 +1.0
258,442 + +0.7
258,443 - -0.2
258,444 + -2.6
258,537 + +1.0
258,538 - +0.8
258,538 - -0.6
258,624 - PP_0207 0.11 +0.1
258,624 - PP_0207 0.11 +0.4
258,624 - PP_0207 0.11 -1.2
258,624 - PP_0207 0.11 +0.0
258,624 - PP_0207 0.11 +0.1
258,644 + PP_0207 0.13 +1.0
258,644 + PP_0207 0.13 -2.1
258,659 + PP_0207 0.14 +0.9
258,659 + PP_0207 0.14 +0.2
258,660 - PP_0207 0.14 -0.2
258,660 - PP_0207 0.14 -0.9
258,660 - PP_0207 0.14 -0.2
258,908 + PP_0207 0.31 -0.4
259,080 + PP_0207 0.44 -0.4
259,080 + PP_0207 0.44 +1.2
259,080 + PP_0207 0.44 +1.5
259,080 + PP_0207 0.44 -0.0
259,113 - PP_0207 0.46 +0.1
259,113 - PP_0207 0.46 -0.7
259,113 - +2.1
259,181 + PP_0207 0.51 +0.9
259,181 + PP_0207 0.51 +1.5
259,182 - PP_0207 0.51 -1.1
259,203 - PP_0207 0.52 -0.7
259,256 + PP_0207 0.56 +0.5
259,257 - PP_0207 0.56 -0.1
259,305 - PP_0207 0.60 +0.2
259,305 - PP_0207 0.60 -1.8

Or see this region's nucleotide sequence