Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0589 and PP_5446 are separated by 4 nucleotides PP_5446 and PP_0590 are separated by 450 nucleotides
PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317
_0589
PP_5446: PP_5446 - protein of unknown function, at 688,322 to 688,504
_5446
PP_0590: PP_0590 - Transcriptional regulator, ArsR family, at 688,955 to 689,668
_0590
Position (kb) 688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.363 kb on + strand, within PP_0589 at 687.397 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.694 kb on - strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.811 kb on - strand, within PP_0589 at 687.844 kb on + strand, within PP_0589 at 687.866 kb on - strand at 687.883 kb on - strand, within PP_0589 at 687.900 kb on + strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.175 kb on + strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.206 kb on - strand at 688.206 kb on - strand at 688.451 kb on + strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.502 kb on + strand at 688.502 kb on + strand at 688.503 kb on - strand at 688.503 kb on - strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.587 kb on - strand at 688.639 kb on - strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.859 kb on + strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.861 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.947 kb on - strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.973 kb on - strand at 688.973 kb on - strand at 688.973 kb on - strand at 689.071 kb on - strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.166 kb on - strand, within PP_0590 at 689.202 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.221 kb on - strand, within PP_0590 at 689.242 kb on + strand, within PP_0590 at 689.339 kb on + strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.340 kb on - strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.435 kb on + strand, within PP_0590 at 689.436 kb on - strand, within PP_0590
Per-strain Table
Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL remove 687,363 + PP_0589 0.19 +1.4 687,397 + PP_0589 0.22 +0.1 687,693 + PP_0589 0.47 +0.6 687,693 + PP_0589 0.47 +0.4 687,693 + PP_0589 0.47 -0.1 687,693 + PP_0589 0.47 -0.6 687,693 + PP_0589 0.47 +1.0 687,693 + PP_0589 0.47 +0.1 687,694 - PP_0589 0.47 +0.4 687,808 + PP_0589 0.57 +0.0 687,808 + PP_0589 0.57 -0.3 687,811 - PP_0589 0.57 +0.2 687,844 + PP_0589 0.60 -0.4 687,866 - +0.4 687,883 - PP_0589 0.63 -0.8 687,900 + PP_0589 0.65 -0.5 687,980 - PP_0589 0.71 +0.2 687,980 - PP_0589 0.71 -0.1 688,065 + PP_0589 0.79 -0.3 688,065 + PP_0589 0.79 -1.2 688,175 + PP_0589 0.88 -0.8 688,176 - PP_0589 0.88 +0.9 688,176 - PP_0589 0.88 +0.4 688,206 - -0.2 688,206 - -1.6 688,451 + PP_5446 0.70 +1.2 688,452 - PP_5446 0.71 +0.2 688,452 - PP_5446 0.71 -3.5 688,473 + PP_5446 0.83 +1.4 688,473 + PP_5446 0.83 +0.3 688,473 + PP_5446 0.83 -0.1 688,473 + PP_5446 0.83 +2.0 688,473 + PP_5446 0.83 -0.6 688,473 + PP_5446 0.83 +0.5 688,474 - PP_5446 0.83 +0.1 688,474 - PP_5446 0.83 +0.7 688,474 - PP_5446 0.83 -0.5 688,502 + -0.2 688,502 + +0.6 688,503 - -0.1 688,503 - +0.3 688,555 + -0.6 688,555 + -0.3 688,555 + +0.0 688,555 + +0.1 688,587 - -0.0 688,639 - +0.1 688,793 + -2.3 688,793 + -0.8 688,793 + -1.6 688,793 + -0.6 688,817 + -1.5 688,817 + -0.5 688,818 - -1.8 688,859 + +0.7 688,860 - +0.9 688,860 - +0.2 688,860 - +0.7 688,861 + +1.4 688,946 + -0.1 688,946 + -0.3 688,946 + +1.4 688,946 + +0.8 688,946 + +0.0 688,947 - +0.2 688,948 + +0.8 688,948 + +0.1 688,948 + -1.8 688,948 + -0.5 688,948 + -1.3 688,948 + -0.8 688,949 - +0.2 688,949 - -0.3 688,949 - +0.4 688,949 - +0.7 688,949 - -0.3 688,949 - +0.2 688,949 - -1.1 688,949 - +1.4 688,972 + +0.6 688,972 + -1.3 688,972 + -0.5 688,973 - -0.3 688,973 - +0.1 688,973 - +0.0 689,071 - PP_0590 0.16 -0.9 689,165 + PP_0590 0.29 +0.6 689,165 + PP_0590 0.29 +1.4 689,165 + PP_0590 0.29 +0.5 689,166 - PP_0590 0.30 -0.1 689,202 + PP_0590 0.35 -0.8 689,220 + PP_0590 0.37 -0.8 689,220 + PP_0590 0.37 +0.1 689,221 - PP_0590 0.37 -0.8 689,242 + PP_0590 0.40 -0.3 689,339 + PP_0590 0.54 -0.0 689,340 - PP_0590 0.54 +0.8 689,340 - PP_0590 0.54 +1.4 689,340 - PP_0590 0.54 -0.3 689,435 + PP_0590 0.67 -1.6 689,435 + PP_0590 0.67 -1.7 689,435 + PP_0590 0.67 +0.6 689,436 - PP_0590 0.67 +1.0
Or see this region's nucleotide sequence