Strain Fitness in Pseudomonas putida KT2440 around PP_4700

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
5,340,735	+				-1.7
5,340,735	+				+0.8
5,340,735	+				-0.5
5,340,735	+				+0.9
5,340,737	+				+0.7
5,340,737	+				-0.0
5,340,738	-				-0.3
5,340,738	-				-0.3
5,340,738	-				+0.7
5,340,738	-				-1.2
5,340,738	-				-0.2
5,340,769	-				-2.7
5,340,769	-				-0.0
5,340,840	+				-0.1
5,340,841	-				-0.0
5,340,841	-				-0.4
5,340,841	-				-1.0
5,340,841	-				-2.1
5,340,841	-				+0.4
5,340,891	+				-1.9
5,340,891	+				-2.4
5,340,892	-				-3.0
5,340,904	+				-1.2
5,340,905	-				-2.7
5,340,911	+				+0.7
5,340,911	+				+0.3
5,340,911	+				-1.6
5,340,912	-				-2.5
5,340,966	+				-0.5
5,340,966	+				-0.0
5,340,966	+				-1.3
5,340,966	+				+0.8
5,341,092	+		PP_4699	0.25	-1.9
5,341,093	-		PP_4699	0.25	-1.5
5,341,285	+		PP_4699	0.49	+0.3
5,341,285	+		PP_4699	0.49	-3.5
5,341,341	+		PP_4699	0.56	+1.3
5,341,442	-		PP_4699	0.68	-2.2
5,341,528	+		PP_4699	0.79	-1.4
5,341,528	+		PP_4699	0.79	-1.4
5,341,528	+		PP_4699	0.79	-0.8
5,341,528	+		PP_4699	0.79	-0.3
5,341,529	-		PP_4699	0.79	-0.5
5,341,534	+		PP_4699	0.80	-2.5
5,341,535	-		PP_4699	0.80	-2.2
5,341,615	+				-1.7
5,341,635	+				-2.0
5,341,635	+				-3.4
5,341,696	+				+0.9
5,341,696	+				-1.4
5,341,852	+		PP_4700	0.19	-1.8
5,341,901	+		PP_4700	0.24	-3.0
5,341,902	-		PP_4700	0.24	-2.8
5,342,148	-				-1.0
5,342,148	-				-1.6
5,342,148	-		PP_4700	0.53	-1.9
5,342,148	-				-1.5
5,342,192	-		PP_4700	0.58	-3.6
5,342,192	-		PP_4700	0.58	-2.8
5,342,265	-		PP_4700	0.66	-2.3
5,342,284	+		PP_4700	0.69	-1.6
5,342,285	-				-1.9
5,342,285	-		PP_4700	0.69	-2.9
5,342,303	+		PP_4700	0.71	-1.3
5,342,304	-		PP_4700	0.71	-2.3
5,342,414	+		PP_4700	0.84	-2.0
5,342,424	+		PP_4700	0.85	-2.2
5,342,424	+		PP_4700	0.85	-1.0
5,342,425	-				-1.9
5,342,425	-				-2.3
5,342,425	-				-1.9
5,342,493	-				-2.2
5,342,526	-				+0.1
5,342,526	-				-0.1
5,342,608	+				+1.3
5,342,609	-				+0.2
5,342,609	-				-0.4
5,342,658	-				-1.3
5,342,685	+				+0.0
5,342,685	+				-0.2
5,342,685	+				+2.3
5,342,685	+				-1.4
5,342,685	+				+0.1
5,342,685	+				-1.3
5,342,686	-				-1.2
5,342,687	+				+0.7
5,342,688	-				-0.4
5,342,688	-				-0.4
5,342,688	-				+0.4
5,342,767	+				+0.3
5,342,767	+				+0.2
5,342,768	-				+2.2
5,342,768	-				-0.8
5,342,770	+				-0.5
5,342,771	-				+0.6
5,342,771	-				-1.6
5,342,775	+				-1.0
5,342,776	-				-0.6
5,342,776	-				-0.8
5,342,776	-				-0.2
5,343,442	-		PP_4701	0.41	-0.6