Strain Fitness in Pseudomonas putida KT2440 around PP_4329

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
4,918,541	-		PP_4328	0.60	+0.1
4,918,618	-		PP_4328	0.65	-1.0
4,918,986	+		PP_4328	0.89	-0.5
4,918,987	-		PP_4328	0.89	-0.5
4,918,987	-		PP_4328	0.89	-2.1
4,918,987	-		PP_4328	0.89	+1.4
4,919,163	+				-0.5
4,919,163	+				+0.5
4,919,163	+				-1.9
4,919,195	-		PP_4329	0.12	+0.1
4,919,346	-		PP_4329	0.56	+1.3
4,919,359	+		PP_4329	0.60	+0.3
4,919,359	+		PP_4329	0.60	+0.1
4,919,495	+				-0.5
4,919,495	+				-2.0
4,919,495	+				-1.2
4,919,495	+				+0.3
4,919,495	+				-1.7
4,919,496	-				+0.1
4,919,496	-				-0.3
4,919,496	-				+0.1
4,919,496	-				-0.2
4,919,499	+				+0.0
4,919,546	+				-0.1
4,919,547	-				-0.9
4,919,555	+				+0.6
4,919,555	+				-0.1
4,919,556	-				+0.9
4,919,556	-				+0.8
4,919,602	+				+0.5
4,919,603	-				-1.0
4,919,603	-				-1.0
4,919,603	-				-1.0
4,919,606	-				-0.2
4,919,724	+				-0.3
4,919,724	+				+0.5
4,919,745	+				-0.5
4,919,745	+				-0.3
4,919,745	+				-0.6
4,919,745	+				+1.1
4,919,746	-				+1.1
4,919,746	-				-0.0
4,919,746	-				-0.0
4,919,746	-				-0.4
4,919,746	-				+0.9
4,919,746	-				+0.1
4,919,746	-				-0.3
4,919,940	+		PP_4330	0.13	-0.1
4,919,940	+		PP_4330	0.13	-0.2
4,919,940	+		PP_4330	0.13	+2.7
4,919,941	-		PP_4330	0.13	-0.7
4,919,941	-		PP_4330	0.13	+0.1
4,919,941	-		PP_4330	0.13	-1.0
4,919,941	-		PP_4330	0.13	+0.2
4,919,942	+		PP_4330	0.13	-2.4
4,919,942	+		PP_4330	0.13	+0.5
4,919,942	+		PP_4330	0.13	-0.9
4,919,976	+		PP_4330	0.14	-0.3
4,919,977	-		PP_4330	0.14	-0.6
4,920,075	+		PP_4330	0.18	+2.1
4,920,227	-		PP_4330	0.24	-0.5
4,920,249	+		PP_4330	0.24	-0.1
4,920,249	+		PP_4330	0.24	-0.0
4,920,249	+		PP_4330	0.24	-1.0
4,920,249	+		PP_4330	0.24	-0.7
4,920,249	+		PP_4330	0.24	-1.7
4,920,249	+		PP_4330	0.24	+0.4
4,920,249	+		PP_4330	0.24	+0.1
4,920,249	+		PP_4330	0.24	+0.2
4,920,249	+		PP_4330	0.24	-1.3
4,920,249	+		PP_4330	0.24	-0.2
4,920,249	+		PP_4330	0.24	-0.5
4,920,250	-		PP_4330	0.25	-0.1
4,920,250	-		PP_4330	0.25	-0.1
4,920,250	-		PP_4330	0.25	+0.2
4,920,250	-		PP_4330	0.25	-0.0
4,920,250	-		PP_4330	0.25	-1.4
4,920,250	-		PP_4330	0.25	+0.4
4,920,250	-		PP_4330	0.25	+0.2
4,920,250	-		PP_4330	0.25	-1.0
4,920,250	-		PP_4330	0.25	+2.1
4,920,250	-		PP_4330	0.25	+0.3
4,920,250	-		PP_4330	0.25	+0.3
4,920,255	+		PP_4330	0.25	-2.7
4,920,255	+		PP_4330	0.25	+0.2
4,920,256	-		PP_4330	0.25	-2.2
4,920,256	-		PP_4330	0.25	-0.2
4,920,256	-		PP_4330	0.25	+0.1
4,920,276	+		PP_4330	0.26	-0.5
4,920,276	+		PP_4330	0.26	+0.5
4,920,276	+		PP_4330	0.26	-0.2
4,920,277	-		PP_4330	0.26	+0.6
4,920,277	-		PP_4330	0.26	-0.2
4,920,277	-		PP_4330	0.26	+0.2
4,920,277	-		PP_4330	0.26	+1.0
4,920,277	-		PP_4330	0.26	-0.5
4,920,312	+		PP_4330	0.27	+0.1
4,920,312	+		PP_4330	0.27	-1.0
4,920,312	+		PP_4330	0.27	-0.2
4,920,312	+		PP_4330	0.27	+0.3
4,920,312	+		PP_4330	0.27	+0.3
4,920,313	-		PP_4330	0.27	+2.1
4,920,313	-		PP_4330	0.27	-0.5
4,920,313	-		PP_4330	0.27	+0.2
4,920,313	-		PP_4330	0.27	-2.2
4,920,313	-		PP_4330	0.27	+0.1
4,920,313	-		PP_4330	0.27	+2.1
4,920,313	-		PP_4330	0.27	+0.3
4,920,323	+		PP_4330	0.27	+0.4