Strain Fitness in Pseudomonas putida KT2440 around PP_3328

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,764,282	+				+0.2
3,764,283	-				-1.1
3,764,308	-				-2.0
3,764,404	-				+1.4
3,764,456	+				-0.6
3,764,570	-				-0.6
3,764,624	-				+0.8
3,764,675	+				+1.7
3,764,743	+				+1.0
3,764,744	-				+0.7
3,764,744	-				-0.6
3,764,784	-				-0.4
3,764,880	+				-0.2
3,764,895	+				+0.1
3,764,940	+				+0.2
3,765,070	-				-1.5
3,765,167	+				-0.2
3,765,168	-				+0.6
3,765,278	+		PP_3328	0.30	-0.3
3,765,389	-		PP_3328	0.57	+1.2
3,765,536	-				-0.3
3,765,707	+				-1.1
3,765,708	-				-0.5
3,765,708	-				+0.1
3,765,774	+		PP_5599	0.12	-0.2
3,765,776	+		PP_5599	0.12	-0.9
3,765,776	+		PP_5599	0.12	+1.4
3,765,777	-		PP_5599	0.12	+0.6
3,765,777	-		PP_5599	0.12	-1.1
3,765,937	+		PP_5599	0.31	-0.8
3,765,960	+		PP_5599	0.33	-0.8
3,765,960	+		PP_5599	0.33	+0.3
3,765,978	-		PP_5599	0.35	+0.9
3,766,028	+		PP_5599	0.41	+0.2
3,766,070	+		PP_5599	0.46	+0.1
3,766,071	-		PP_5599	0.46	+0.7
3,766,103	+		PP_5599	0.50	+0.3
3,766,103	+		PP_5599	0.50	+0.6
3,766,103	+		PP_5599	0.50	+0.8
3,766,104	-		PP_5599	0.50	-1.6
3,766,104	-		PP_5599	0.50	+0.7
3,766,104	-		PP_5599	0.50	-0.4
3,766,137	+		PP_5599	0.53	-0.3
3,766,137	+		PP_5599	0.53	-0.8
3,766,137	+		PP_5599	0.53	+0.1
3,766,137	+		PP_5599	0.53	+0.2
3,766,138	-		PP_5599	0.54	-1.3
3,766,138	-		PP_5599	0.54	+0.7
3,766,139	+		PP_5599	0.54	+1.7
3,766,238	-		PP_5599	0.65	-0.1
3,766,277	-		PP_5599	0.70	+0.1
3,766,277	-		PP_5599	0.70	-0.1
3,766,314	+		PP_5599	0.74	+0.5
3,766,335	+		PP_5599	0.76	-2.3
3,766,335	+		PP_5599	0.76	-1.9
3,766,335	+		PP_5599	0.76	+0.8
3,766,335	+		PP_5599	0.76	+0.2
3,766,336	-		PP_5599	0.76	+0.3
3,766,339	+		PP_5599	0.77	-1.6
3,766,339	+		PP_5599	0.77	-0.5
3,766,339	+		PP_5599	0.77	+0.8
3,766,339	+		PP_5599	0.77	+0.5
3,766,339	+				+0.2
3,766,339	+		PP_5599	0.77	+0.1
3,766,339	+		PP_5599	0.77	+0.7
3,766,339	+		PP_5599	0.77	-0.5
3,766,340	-		PP_5599	0.77	+0.5
3,766,340	-		PP_5599	0.77	+0.2
3,766,340	-		PP_5599	0.77	+0.3
3,766,340	-		PP_5599	0.77	+0.3
3,766,340	-		PP_5599	0.77	-0.7
3,766,340	-		PP_5599	0.77	+1.1
3,766,409	+		PP_5599	0.85	-1.8
3,766,409	+		PP_5599	0.85	+0.9
3,766,410	-		PP_5599	0.85	-1.1
3,766,441	+		PP_5599	0.88	+0.8
3,766,441	+		PP_5599	0.88	+0.2
3,766,441	+		PP_5599	0.88	-0.4
3,766,441	+		PP_5599	0.88	-1.0
3,766,442	-		PP_5599	0.88	-0.4
3,766,455	-				-0.2
3,766,511	+				-0.6
3,766,511	+				+0.3
3,766,518	+				+0.7
3,766,518	+				-0.1
3,766,518	+				-1.2
3,766,519	-				+0.0
3,766,519	-				+0.4
3,766,519	-				-0.5
3,766,519	-				+0.9
3,766,519	-				-0.9
3,766,519	-				+0.3
3,766,548	+				+0.7
3,766,548	+				+0.9
3,766,548	+				+0.2
3,766,548	+				-0.1
3,766,548	+				+1.2
3,766,548	+				+0.7