Strain Fitness in Pseudomonas putida KT2440 around PP_2912

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
3,310,980	-		PP_2911	0.50	+0.7
3,310,980	-		PP_2911	0.50	-1.3
3,311,025	+		PP_2911	0.53	+0.4
3,311,025	+		PP_2911	0.53	+0.7
3,311,060	-				+1.0
3,311,097	+		PP_2911	0.58	-1.4
3,311,097	+		PP_2911	0.58	-0.5
3,311,097	+		PP_2911	0.58	-1.5
3,311,098	-		PP_2911	0.58	+0.2
3,311,196	+		PP_2911	0.65	+0.1
3,311,218	-		PP_2911	0.67	+0.3
3,311,226	-		PP_2911	0.67	-0.7
3,311,261	-		PP_2911	0.70	+0.5
3,311,337	+		PP_2911	0.75	+0.5
3,311,338	-		PP_2911	0.76	+0.3
3,311,338	-		PP_2911	0.76	+0.3
3,311,403	+		PP_2911	0.80	-0.3
3,311,403	+		PP_2911	0.80	+0.5
3,311,403	+		PP_2911	0.80	-0.6
3,311,403	+		PP_2911	0.80	+0.6
3,311,404	-		PP_2911	0.80	-1.2
3,311,404	-		PP_2911	0.80	-0.2
3,311,404	-		PP_2911	0.80	-0.8
3,311,473	-		PP_2911	0.85	-0.5
3,311,536	+		PP_2911	0.90	+0.2
3,311,536	+		PP_2911	0.90	+0.9
3,311,537	-		PP_2911	0.90	+0.3
3,311,537	-		PP_2911	0.90	-1.9
3,311,777	+				+1.5
3,311,778	-				+0.1
3,311,821	+				+0.0
3,311,821	+				+0.9
3,311,822	-				-0.5
3,311,822	-				-1.5
3,311,824	+				-0.3
3,311,825	-				-0.4
3,311,860	-		PP_2912	0.11	+0.3
3,311,860	-		PP_2912	0.11	+0.1
3,311,884	+		PP_2912	0.13	+1.3
3,311,901	+		PP_2912	0.15	+1.0
3,311,902	-		PP_2912	0.15	+0.8
3,311,904	-		PP_2912	0.15	+1.6
3,311,962	+		PP_2912	0.22	+0.8
3,311,962	+		PP_2912	0.22	-0.8
3,311,963	-		PP_2912	0.22	+2.1
3,312,099	+		PP_2912	0.37	+0.6
3,312,178	+		PP_2912	0.46	-0.0
3,312,178	+		PP_2912	0.46	-0.4
3,312,178	+		PP_2912	0.46	+1.5
3,312,179	-		PP_2912	0.46	+0.2
3,312,533	+		PP_2912	0.86	-1.4
3,312,533	+		PP_2912	0.86	-0.5
3,312,534	-		PP_2912	0.86	+0.2
3,312,535	+		PP_2912	0.86	+0.7
3,312,657	+				-0.5
3,312,658	-				+0.3
3,312,658	-				+1.1
3,312,662	+				+1.9
3,312,662	+				+0.4
3,312,663	-				-2.5
3,312,663	-				-0.3
3,312,786	+				-0.1
3,312,786	+				+0.6
3,312,786	+				-0.1
3,312,786	+				-0.2
3,312,786	+				+0.9
3,312,791	+				+0.3
3,312,791	+				-1.8
3,312,791	+				+0.5
3,312,791	+				-1.5
3,312,793	+				+0.5