Strain Fitness in Pseudomonas putida KT2440 around PP_1001

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
1,138,884	+		PP_1000	0.25	+0.8
1,139,163	+		PP_1000	0.52	-0.4
1,139,163	+		PP_1000	0.52	+1.5
1,139,170	-		PP_1000	0.53	+2.8
1,139,170	-		PP_1000	0.53	+1.2
1,139,170	-		PP_1000	0.53	-2.0
1,139,244	+		PP_1000	0.60	+0.4
1,139,326	-		PP_1000	0.68	+0.2
1,139,340	+		PP_1000	0.70	+1.0
1,139,340	+		PP_1000	0.70	-0.7
1,139,340	+		PP_1000	0.70	-0.6
1,139,341	-		PP_1000	0.70	+0.4
1,139,341	-		PP_1000	0.70	-0.1
1,139,415	+		PP_1000	0.77	+0.4
1,139,416	-		PP_1000	0.77	-0.6
1,139,416	-		PP_1000	0.77	+0.3
1,139,439	+		PP_1000	0.80	+1.2
1,139,439	+		PP_1000	0.80	-0.2
1,139,440	-		PP_1000	0.80	-1.0
1,139,538	+		PP_1000	0.89	-0.1
1,139,538	+		PP_1000	0.89	+0.7
1,139,578	-				+1.7
1,139,706	-				+0.2
1,139,715	+				+0.6
1,139,716	-				+0.2
1,139,718	+				+0.1
1,139,719	-				+0.3
1,139,841	+		PP_1001	0.10	+3.2
1,139,842	-		PP_1001	0.10	+2.0
1,139,842	-		PP_1001	0.10	-0.6
1,140,015	-		PP_1001	0.24	-0.0
1,140,027	+		PP_1001	0.25	-0.6
1,140,251	-		PP_1001	0.43	-0.0
1,140,381	+		PP_1001	0.53	+1.1
1,140,426	+		PP_1001	0.57	+0.2
1,140,427	-		PP_1001	0.57	-0.6
1,140,537	+		PP_1001	0.66	+0.4
1,140,537	+		PP_1001	0.66	+0.9
1,140,644	-		PP_1001	0.74	-0.4
1,140,644	-		PP_1001	0.74	+1.1
1,140,945	+				-0.6
1,140,946	-				-1.9
1,140,946	-				-0.1
1,141,023	+				-0.2
1,141,032	+				+1.2
1,141,033	-				-0.2
1,141,033	-				+0.3
1,141,174	-		PP_1002	0.12	+0.5
1,141,192	-		PP_1002	0.13	-0.5
1,141,192	-		PP_1002	0.13	-0.4
1,141,210	-		PP_1002	0.15	-2.7
1,141,210	-		PP_1002	0.15	-0.8
1,141,269	+		PP_1002	0.19	+0.0
1,141,270	-		PP_1002	0.19	+0.6
1,141,303	-		PP_1002	0.21	-0.8
1,141,320	+		PP_1002	0.22	-0.7
1,141,351	-		PP_1002	0.25	-1.3
1,141,365	+		PP_1002	0.25	+0.2
1,141,365	+		PP_1002	0.25	-0.8
1,141,366	-		PP_1002	0.26	+1.3
1,141,366	-		PP_1002	0.26	-0.1
1,141,366	-		PP_1002	0.26	+0.0
1,141,877	-		PP_1002	0.61	+2.2