Strain Fitness in Pseudomonas putida KT2440 around PP_0971

Experiment: MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL
1,110,441	+		PP_0970	0.36	+0.9
1,110,441	+		PP_0970	0.36	-0.7
1,110,442	-		PP_0970	0.36	-2.6
1,110,442	-		PP_0970	0.36	+1.1
1,110,442	-		PP_0970	0.36	+0.6
1,110,447	+		PP_0970	0.36	+0.1
1,110,501	+		PP_0970	0.40	-0.1
1,110,501	+		PP_0970	0.40	+0.7
1,110,502	-		PP_0970	0.40	-0.4
1,110,502	-		PP_0970	0.40	+0.2
1,110,502	-		PP_0970	0.40	-0.6
1,110,503	+		PP_0970	0.40	+0.6
1,110,503	+		PP_0970	0.40	+0.2
1,110,503	+		PP_0970	0.40	+0.4
1,110,503	+		PP_0970	0.40	+0.7
1,110,504	-		PP_0970	0.41	-1.0
1,110,504	-		PP_0970	0.41	-0.5
1,110,504	-		PP_0970	0.41	-0.7
1,110,504	-		PP_0970	0.41	-0.3
1,110,504	-		PP_0970	0.41	-1.6
1,110,504	-		PP_0970	0.41	+0.5
1,110,504	-		PP_0970	0.41	-1.8
1,110,517	-		PP_0970	0.42	-0.2
1,110,552	+		PP_0970	0.44	+0.5
1,110,552	+		PP_0970	0.44	-0.4
1,110,731	+		PP_0970	0.58	+0.6
1,110,731	+		PP_0970	0.58	-1.5
1,110,731	+		PP_0970	0.58	-1.2
1,110,732	-		PP_0970	0.58	-0.4
1,110,732	-		PP_0970	0.58	-1.1
1,110,732	-		PP_0970	0.58	+0.1
1,110,732	-		PP_0970	0.58	-1.1
1,110,732	-		PP_0970	0.58	+0.9
1,110,732	-		PP_0970	0.58	+0.1
1,110,732	-		PP_0970	0.58	-1.3
1,110,732	-		PP_0970	0.58	-0.8
1,110,734	-		PP_0970	0.58	+0.2
1,110,734	-		PP_0970	0.58	+0.3
1,110,758	+		PP_0970	0.60	-0.1
1,110,758	+				-0.4
1,110,759	-		PP_0970	0.60	+1.0
1,110,759	-		PP_0970	0.60	-0.3
1,110,963	-		PP_0970	0.76	+0.1
1,110,963	-		PP_0970	0.76	+0.7
1,111,113	-		PP_0970	0.87	+0.1
1,111,114	+		PP_0970	0.87	+1.1
1,111,115	-		PP_0970	0.87	-1.6
1,111,290	-				+0.2
1,111,350	+				-1.5
1,111,351	-				+1.5
1,111,370	+				+0.6
1,111,371	-				-0.4
1,111,371	-				-0.8
1,111,425	+				+0.2
1,111,425	+				+0.8
1,111,426	-				+0.1
1,111,535	+		PP_0971	0.31	+1.1
1,111,535	+		PP_0971	0.31	+0.4
1,111,536	-		PP_0971	0.31	+0.3
1,111,631	+		PP_0971	0.51	+2.3
1,111,631	+		PP_0971	0.51	-0.2
1,111,632	-		PP_0971	0.51	+0.5
1,111,632	-		PP_0971	0.51	-1.0
1,111,632	-		PP_0971	0.51	+0.5
1,111,635	+		PP_0971	0.52	+0.6
1,111,635	+		PP_0971	0.52	+1.6
1,111,635	+		PP_0971	0.52	+0.4
1,111,636	-		PP_0971	0.52	+0.9
1,111,636	-		PP_0971	0.52	+0.3
1,111,636	-		PP_0971	0.52	-1.5
1,111,636	-		PP_0971	0.52	-2.0
1,111,888	-				+0.6
1,111,903	+				-0.8
1,112,000	-		PP_0972	0.37	+0.1
1,112,032	+		PP_0972	0.47	-0.4
1,112,033	-		PP_0972	0.47	-0.4
1,112,033	-		PP_0972	0.47	+1.0
1,112,033	-		PP_0972	0.47	-1.0
1,112,033	-		PP_0972	0.47	+1.0
1,112,226	+				-0.0
1,112,226	+				-0.1
1,112,227	-				-1.3
1,112,373	+		PP_0973	0.22	-0.0
1,112,374	-				-0.6
1,112,460	+		PP_0973	0.31	-0.8
1,112,605	-		PP_0973	0.45	+1.4
1,112,648	-		PP_0973	0.50	+0.7
1,112,648	-		PP_0973	0.50	-1.6
1,112,648	-		PP_0973	0.50	+1.4
1,112,648	-		PP_0973	0.50	-1.9
1,112,776	+		PP_0973	0.62	-0.1
1,112,777	-		PP_0973	0.62	+0.4
1,112,803	-		PP_0973	0.65	+0.5