Strain Fitness in Pseudomonas putida KT2440 around PP_3871

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
4,394,190	+		PP_3869	0.47	-0.4
4,394,190	+		PP_3869	0.47	-0.3
4,394,190	+		PP_3869	0.47	-0.1
4,394,202	+		PP_3869	0.48	+0.4
4,394,202	+		PP_3869	0.48	+1.1
4,394,202	+		PP_3869	0.48	+0.5
4,394,203	-		PP_3869	0.48	+2.2
4,394,203	-		PP_3869	0.48	+0.9
4,394,616	+		PP_3869	0.76	+3.2
4,394,617	-		PP_3869	0.76	-2.5
4,394,617	-		PP_3869	0.76	+0.0
4,394,745	+		PP_3869	0.85	+1.8
4,394,745	+		PP_3869	0.85	+1.2
4,394,745	+		PP_3869	0.85	-3.0
4,394,745	+				+3.5
4,394,746	-		PP_3869	0.85	-0.6
4,394,746	-		PP_3869	0.85	+0.1
4,394,746	-		PP_3869	0.85	+0.0
4,394,746	-		PP_3869	0.85	-0.6
4,394,920	-				+0.0
4,394,972	+				+0.6
4,394,972	+				+0.7
4,394,972	+				-1.0
4,394,973	-				-1.3
4,394,973	-				-0.6
4,394,973	-				+1.8
4,394,973	-				+0.4
4,394,973	-				+1.0
4,394,989	-				-0.2
4,395,181	+				+1.0
4,395,319	+		PP_3871	0.23	-0.6
4,395,320	-		PP_3871	0.24	-1.0
4,395,394	+		PP_3871	0.36	-0.6
4,395,420	+		PP_3871	0.40	+1.0
4,395,420	+		PP_3871	0.40	-0.6
4,395,420	+		PP_3871	0.40	-0.5
4,395,421	-		PP_3871	0.41	-0.4
4,395,439	+		PP_3871	0.44	-2.4
4,395,440	-		PP_3871	0.44	-0.3
4,395,454	+		PP_3871	0.46	-0.5
4,395,649	+		PP_3871	0.79	+0.4
4,395,650	-		PP_3871	0.79	+0.0
4,395,958	+		PP_3873	0.30	+0.3
4,395,959	-		PP_3873	0.30	+0.2
4,395,959	-		PP_3873	0.30	-0.1
4,395,959	-		PP_3873	0.30	+1.2
4,395,959	-		PP_3873	0.30	+0.2
4,396,029	+		PP_3873	0.44	-0.4
4,396,029	+		PP_3873	0.44	-0.9
4,396,029	+		PP_3873	0.44	-0.7
4,396,030	-		PP_3873	0.44	-1.4
4,396,041	+		PP_3873	0.46	+2.0
4,396,041	+		PP_3873	0.46	-0.5
4,396,041	+		PP_3873	0.46	+1.2
4,396,041	+		PP_3873	0.46	-1.3
4,396,041	+		PP_3873	0.46	+1.4
4,396,041	+		PP_3873	0.46	+0.2
4,396,041	+		PP_3873	0.46	+0.2
4,396,042	-		PP_3873	0.46	+0.3
4,396,042	-		PP_3873	0.46	-0.0
4,396,042	-		PP_3873	0.46	-0.8
4,396,042	-		PP_3873	0.46	-0.4
4,396,042	-		PP_3873	0.46	-0.0
4,396,042	-		PP_3873	0.46	-2.0
4,396,042	-		PP_3873	0.46	+0.7
4,396,042	-		PP_3873	0.46	-0.8
4,396,042	-		PP_3873	0.46	+0.2
4,396,044	+		PP_3873	0.47	+0.2
4,396,045	-		PP_3873	0.47	-0.4
4,396,045	-		PP_3873	0.47	-0.0
4,396,045	-		PP_3873	0.47	+2.1
4,396,129	+		PP_3873	0.63	-1.0
4,396,130	-		PP_3873	0.63	+0.6
4,396,149	+		PP_3873	0.67	-0.0
4,396,150	-		PP_3873	0.67	-0.4
4,396,312	+				+0.1
4,396,313	-				-0.1
4,396,318	+				-0.2
4,396,318	+				+0.2
4,396,520	-		PP_3874	0.56	-0.9
4,396,520	-		PP_3874	0.56	+2.3
4,396,628	+		PP_3874	0.85	-0.7
4,396,629	-		PP_3874	0.85	-1.2
4,396,667	+				+0.5
4,396,667	+				+1.2
4,396,667	+				-0.9
4,396,668	-				-0.0
4,396,668	-				-0.1
4,396,671	+				+0.9
4,396,671	+				+1.4
4,396,671	+				+0.6
4,396,672	-				-0.9
4,396,672	-				-0.3
4,396,679	+				-0.6