Strain Fitness in Pseudomonas putida KT2440 around PP_3860

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
4,383,505	+		PP_3858	0.56	+0.6
4,383,506	-		PP_3858	0.57	+0.6
4,383,523	+		PP_3858	0.59	+0.4
4,383,568	+		PP_3858	0.64	-0.1
4,383,569	-		PP_3858	0.64	+0.7
4,383,589	+		PP_3858	0.67	+0.1
4,383,590	-		PP_3858	0.67	-0.0
4,383,706	+		PP_3858	0.81	-1.2
4,383,717	-		PP_3858	0.83	-2.4
4,383,744	-		PP_3858	0.86	-2.3
4,383,770	+		PP_3858	0.89	+1.0
4,383,771	-		PP_3858	0.90	-0.2
4,383,868	+				-0.0
4,383,868	+				+0.6
4,383,868	+				+0.2
4,383,868	+				+0.7
4,383,868	+				-0.2
4,383,869	-				-0.2
4,383,869	-				+1.0
4,383,869	-				+0.4
4,383,869	-				+0.1
4,383,869	-				+1.6
4,383,869	-				+0.7
4,383,870	+				+0.3
4,383,871	-				+0.3
4,383,897	+				-0.6
4,383,897	+				+1.0
4,383,898	-				-1.5
4,383,981	+		PP_3859	0.19	+0.6
4,383,982	-		PP_3859	0.19	+0.3
4,384,185	+		PP_3859	0.51	+0.6
4,384,185	+		PP_3859	0.51	+2.5
4,384,185	+		PP_3859	0.51	-0.2
4,384,186	-				-0.4
4,384,186	-		PP_3859	0.51	-0.4
4,384,186	-		PP_3859	0.51	-0.4
4,384,293	+		PP_3859	0.68	+0.4
4,384,293	+		PP_3859	0.68	-1.0
4,384,293	+		PP_3859	0.68	+0.4
4,384,293	+		PP_3859	0.68	+0.4
4,384,294	-		PP_3859	0.68	+1.4
4,384,294	-		PP_3859	0.68	-0.2
4,384,424	+		PP_3859	0.88	-0.6
4,384,425	-		PP_3859	0.88	+1.0
4,384,479	+				+1.5
4,384,495	+				-0.0
4,384,495	+				+1.7
4,384,518	+				+0.3
4,384,590	+				+0.2
4,384,591	-				+0.4
4,384,612	-		PP_3860	0.11	-0.8
4,384,612	-		PP_3860	0.11	-0.7
4,384,623	-		PP_3860	0.13	-1.5
4,384,757	+		PP_3860	0.25	+0.4
4,384,757	+		PP_3860	0.25	+0.1
4,384,758	-		PP_3860	0.25	-0.6
4,384,758	-		PP_3860	0.25	+1.0
4,384,758	-		PP_3860	0.25	+0.3
4,384,758	-		PP_3860	0.25	-1.9
4,384,758	-		PP_3860	0.25	-0.8
4,384,793	+		PP_3860	0.29	-0.3
4,384,793	+		PP_3860	0.29	-0.2
4,384,793	+		PP_3860	0.29	-1.0
4,384,794	-		PP_3860	0.29	+0.2
4,384,794	-		PP_3860	0.29	-1.5
4,384,873	-		PP_3860	0.36	-1.3
4,385,164	-		PP_3860	0.64	-0.5
4,385,250	+		PP_3860	0.73	-0.5
4,385,253	+		PP_3860	0.73	-0.0
4,385,253	+		PP_3860	0.73	-1.2
4,385,396	+		PP_3860	0.87	-1.5
4,385,397	-		PP_3860	0.87	+0.0
4,385,397	-		PP_3860	0.87	-0.9
4,385,405	+		PP_3860	0.87	+0.2
4,385,405	+		PP_3860	0.87	+0.8
4,385,419	-		PP_3860	0.89	-0.8
4,385,528	+				-0.3
4,385,528	+				-1.3
4,385,551	+				+0.8
4,385,552	-				-1.8
4,385,597	+		PP_3861	0.19	+0.3
4,385,598	-		PP_3861	0.19	-0.2
4,385,656	+		PP_3861	0.34	+0.1
4,385,700	+		PP_3861	0.45	-0.3
4,385,700	+		PP_3861	0.45	-0.7
4,385,988	+		PP_3862	0.16	-0.6
4,386,037	-		PP_3862	0.26	-0.8
4,386,149	+		PP_3862	0.48	+1.0
4,386,149	+		PP_3862	0.48	+0.1
4,386,150	-		PP_3862	0.48	+1.0
4,386,150	-		PP_3862	0.48	+0.6
4,386,150	-		PP_3862	0.48	+0.1
4,386,338	-		PP_3862	0.86	+0.1
4,386,398	-				-0.8
4,386,427	+				+0.7
4,386,445	+				-0.7
4,386,446	-				-0.6
4,386,493	+				-0.7
4,386,494	-				-0.4