Strain Fitness in Pseudomonas putida KT2440 around PP_3420

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
3,870,184	-		PP_3419	0.49	-0.3
3,870,601	+		PP_3419	0.78	+0.8
3,870,839	+				-0.2
3,870,840	-				-0.7
3,870,857	+				-0.1
3,870,858	-				-0.2
3,870,938	-				-1.2
3,870,946	+				-1.1
3,870,946	+				-0.5
3,870,947	-				-0.0
3,870,947	-				+0.5
3,870,947	-				-1.3
3,870,947	-				-1.8
3,871,508	+		PP_3420	0.42	-0.6
3,871,508	+		PP_3420	0.42	-0.4
3,871,509	-		PP_3420	0.42	+0.4
3,871,509	-		PP_3420	0.42	-0.4
3,871,509	-		PP_3420	0.42	-0.2
3,871,572	+		PP_3420	0.46	+1.0
3,871,573	-		PP_3420	0.46	-0.6
3,871,615	+		PP_3420	0.49	-0.9
3,871,615	+		PP_3420	0.49	+0.2
3,871,615	+		PP_3420	0.49	-0.8
3,871,615	+		PP_3420	0.49	+0.8
3,871,615	+		PP_3420	0.49	-0.6
3,871,615	+		PP_3420	0.49	+0.0
3,871,615	+		PP_3420	0.49	-0.2
3,871,615	+		PP_3420	0.49	-0.5
3,871,615	+		PP_3420	0.49	+2.8
3,871,616	-		PP_3420	0.49	+0.8
3,871,616	-		PP_3420	0.49	+0.8
3,871,616	-		PP_3420	0.49	-0.8
3,871,616	-		PP_3420	0.49	-2.2
3,871,616	-		PP_3420	0.49	-0.5
3,871,653	+		PP_3420	0.51	-0.6
3,871,653	+		PP_3420	0.51	-2.2
3,871,654	-		PP_3420	0.51	+0.6
3,871,654	-		PP_3420	0.51	-0.7
3,871,698	+		PP_3420	0.54	-0.5
3,871,699	-		PP_3420	0.54	-1.2
3,871,761	-		PP_3420	0.59	-0.1
3,871,761	-		PP_3420	0.59	-0.7
3,871,794	+		PP_3420	0.61	-0.1
3,871,812	+		PP_3420	0.62	-1.0
3,871,813	-		PP_3420	0.62	-0.2
3,871,813	-		PP_3420	0.62	-1.2
3,871,867	-		PP_3420	0.66	+0.2
3,871,867	-		PP_3420	0.66	+0.2
3,871,984	-		PP_3420	0.73	-0.3
3,871,984	-		PP_3420	0.73	+1.3
3,872,261	-				+0.6
3,872,403	+				+1.5
3,872,447	-				+0.5
3,872,585	-				-1.8
3,872,596	+				-0.1
3,872,843	+		PP_3421	0.11	+0.3
3,872,916	+		PP_3421	0.16	-0.0
3,872,916	+		PP_3421	0.16	+0.1
3,872,917	-		PP_3421	0.16	-0.1
3,872,978	+		PP_3421	0.20	+0.3
3,872,979	-		PP_3421	0.20	-0.4
3,872,985	+		PP_3421	0.20	-0.8
3,872,985	+		PP_3421	0.20	+0.9
3,873,031	-		PP_3421	0.24	-1.4
3,873,052	-		PP_3421	0.25	+0.8
3,873,079	+		PP_3421	0.27	+0.2
3,873,079	+		PP_3421	0.27	+1.0
3,873,080	-		PP_3421	0.27	+1.5
3,873,080	-		PP_3421	0.27	+0.3
3,873,080	-		PP_3421	0.27	+0.2
3,873,126	+		PP_3421	0.30	-1.1
3,873,203	+		PP_3421	0.35	+0.6
3,873,203	+		PP_3421	0.35	+1.8
3,873,293	+		PP_3421	0.42	+1.2