Strain Fitness in Pseudomonas putida KT2440 around PP_3389

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
3,838,078	-		PP_3388	0.63	-0.5
3,838,567	+		PP_3388	0.81	-1.7
3,838,582	+		PP_3388	0.81	+1.5
3,838,642	+		PP_3388	0.84	+0.1
3,838,643	-		PP_3388	0.84	-0.6
3,838,647	+		PP_3388	0.84	-0.5
3,838,673	+		PP_3388	0.85	-0.0
3,838,674	-		PP_3388	0.85	+1.7
3,838,707	+		PP_3388	0.86	+0.5
3,838,730	+		PP_3388	0.87	+0.1
3,838,733	+		PP_3388	0.87	+0.1
3,838,733	+		PP_3388	0.87	+0.0
3,838,796	-		PP_3388	0.89	+0.3
3,838,796	-		PP_3388	0.89	+1.1
3,838,901	-				-1.9
3,838,904	-				+0.5
3,838,906	+				+0.7
3,838,907	-				+1.9
3,838,947	+				-0.0
3,838,948	-				-1.7
3,839,012	+				+1.1
3,839,023	-				+0.3
3,839,074	+				+1.1
3,839,074	+				+0.5
3,839,077	-				-1.0
3,839,077	-				-0.7
3,839,081	+				-1.1
3,839,134	+				-0.4
3,839,134	+				-0.9
3,839,134	+				+0.3
3,839,134	+				-0.1
3,839,134	+				+1.3
3,839,135	-				+0.8
3,839,135	-				-0.5
3,839,135	-				-0.1
3,839,135	-				+2.3
3,839,135	-				-2.2
3,839,142	-				-2.0
3,839,142	-				-0.6
3,839,190	-				-1.1
3,839,326	+		PP_3389	0.21	+1.1
3,839,332	-		PP_3389	0.22	+0.4
3,839,332	-		PP_3389	0.22	+0.9
3,839,332	-		PP_3389	0.22	+0.3
3,839,379	+		PP_3389	0.26	+0.3
3,839,379	+		PP_3389	0.26	-0.3
3,839,379	+		PP_3389	0.26	+1.6
3,839,379	+		PP_3389	0.26	-0.2
3,839,431	+		PP_3389	0.30	+0.3
3,839,433	+		PP_3389	0.31	+0.3
3,839,433	+		PP_3389	0.31	-0.4
3,839,434	-		PP_3389	0.31	+1.0
3,839,442	+		PP_3389	0.31	+1.6
3,839,443	-		PP_3389	0.32	-0.1
3,839,447	-		PP_3389	0.32	+0.9
3,839,454	+		PP_3389	0.32	-0.1
3,839,499	-		PP_3389	0.36	+0.5
3,839,499	-		PP_3389	0.36	+0.3
3,839,545	-		PP_3389	0.40	+0.5
3,839,545	-		PP_3389	0.40	-0.1
3,839,564	-		PP_3389	0.42	+0.3
3,839,564	-		PP_3389	0.42	+0.7
3,839,564	-		PP_3389	0.42	-1.7
3,839,597	+		PP_3389	0.45	+0.1
3,839,597	+		PP_3389	0.45	-0.0
3,839,598	-		PP_3389	0.45	+1.1
3,839,598	-		PP_3389	0.45	+0.0
3,839,670	+		PP_3389	0.51	+1.0
3,839,670	+		PP_3389	0.51	+1.7
3,839,682	+		PP_3389	0.52	-0.6
3,839,857	-		PP_3389	0.67	+0.3
3,840,362	+				+0.2
3,840,362	+				+0.9
3,840,362	+				+1.1
3,840,363	-				-0.1
3,840,363	-				-0.2
3,840,363	-				+1.4
3,840,363	-				-0.1
3,840,469	+		PP_3390	0.18	+0.4
3,840,474	-		PP_3390	0.18	+0.2
3,840,474	-		PP_3390	0.18	-0.4
3,840,474	-		PP_3390	0.18	-0.7
3,840,474	-		PP_3390	0.18	+0.2
3,840,474	-		PP_3390	0.18	+0.2
3,840,527	+		PP_3390	0.23	+0.4
3,840,593	+		PP_3390	0.28	-0.9
3,840,594	-		PP_3390	0.28	+0.1
3,840,594	-		PP_3390	0.28	+1.7
3,840,594	-		PP_3390	0.28	+0.2
3,840,597	+		PP_3390	0.28	-0.3
3,840,597	+		PP_3390	0.28	+0.2
3,840,597	+		PP_3390	0.28	-0.3
3,840,598	-		PP_3390	0.28	-1.1
3,840,614	+		PP_3390	0.29	+0.4
3,840,614	+		PP_3390	0.29	-0.9
3,840,614	+		PP_3390	0.29	-0.1
3,840,614	+		PP_3390	0.29	+0.6
3,840,614	+		PP_3390	0.29	-0.1
3,840,615	-		PP_3390	0.29	-0.5
3,840,620	+		PP_3390	0.30	+0.6
3,840,621	-		PP_3390	0.30	+0.6
3,840,621	-		PP_3390	0.30	+0.0
3,840,621	-		PP_3390	0.30	-0.3
3,840,621	-		PP_3390	0.30	+0.5
3,840,621	-		PP_3390	0.30	-2.0
3,840,647	+		PP_3390	0.32	+0.5
3,840,900	-		PP_3390	0.52	-0.1
3,840,900	-		PP_3390	0.52	+1.8
3,840,932	+		PP_3390	0.54	+0.4
3,840,933	-		PP_3390	0.54	+0.2
3,840,933	-		PP_3390	0.54	-1.1
3,840,968	+		PP_3390	0.57	-1.2
3,840,969	-		PP_3390	0.57	-0.6
3,841,020	+		PP_3390	0.61	-1.4
3,841,168	+		PP_3390	0.73	+0.2
3,841,169	-		PP_3390	0.73	-0.1
3,841,169	-		PP_3390	0.73	+0.9
3,841,181	+		PP_3390	0.74	+0.2
3,841,234	-		PP_3390	0.78	-0.0