Strain Fitness in Pseudomonas putida KT2440 around PP_2639

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
3,022,404	-		PP_2638	0.84	-0.4
3,022,454	+		PP_2638	0.85	-0.9
3,022,488	+		PP_2638	0.86	-0.0
3,022,489	-		PP_2638	0.86	-0.4
3,022,565	+		PP_2638	0.88	-1.0
3,022,565	+		PP_2638	0.88	+0.2
3,022,565	+		PP_2638	0.88	+0.3
3,022,566	-		PP_2638	0.88	+0.5
3,022,566	-		PP_2638	0.88	-0.3
3,022,581	-		PP_2638	0.89	-1.2
3,022,607	+		PP_2638	0.89	+0.1
3,022,607	+		PP_2638	0.89	-0.5
3,022,607	+		PP_2638	0.89	+1.0
3,022,622	+		PP_2638	0.90	+0.5
3,022,623	-		PP_2638	0.90	-0.0
3,022,623	-		PP_2638	0.90	-1.6
3,022,672	+				-1.3
3,022,672	+				+0.1
3,022,673	-				+0.3
3,022,673	-				+0.2
3,022,821	+				+0.1
3,022,864	+				+0.1
3,022,865	-				-1.1
3,022,865	-				+0.3
3,022,874	+				-0.4
3,022,874	+				-0.7
3,022,874	+				-0.1
3,022,875	-				+0.2
3,022,882	+				-2.0
3,022,899	-				+0.1
3,022,935	+				+0.2
3,022,935	+				+0.2
3,022,935	+				+0.7
3,023,065	-				+0.5
3,023,074	+				+1.2
3,023,075	-				+0.1
3,023,075	-				+0.7
3,023,075	-				+0.3
3,023,078	+				-1.0
3,023,078	+				-0.1
3,023,078	+				+0.4
3,023,079	-				+1.5
3,023,250	+				+0.1
3,023,251	-				-1.5
3,023,440	+		PP_2639	0.14	+0.4
3,023,557	-		PP_2639	0.27	-0.0
3,023,637	+		PP_2639	0.37	+0.1
3,023,637	+		PP_2639	0.37	+1.2
3,023,637	+		PP_2639	0.37	+0.1
3,023,637	+		PP_2639	0.37	+1.1
3,023,637	+		PP_2639	0.37	+0.7
3,023,637	+		PP_2639	0.37	+0.7
3,023,638	-		PP_2639	0.37	+0.3
3,023,638	-		PP_2639	0.37	+0.5
3,023,638	-		PP_2639	0.37	+0.3
3,023,638	-		PP_2639	0.37	+0.7
3,023,638	-		PP_2639	0.37	-0.2
3,023,638	-		PP_2639	0.37	+0.4
3,023,638	-		PP_2639	0.37	+0.7
3,023,639	+		PP_2639	0.37	+1.5
3,023,639	+		PP_2639	0.37	+0.7
3,023,639	+		PP_2639	0.37	+0.5
3,023,716	-		PP_2639	0.46	-0.9
3,023,741	-		PP_2639	0.49	+0.2
3,023,956	+		PP_2639	0.73	-0.9
3,023,956	+		PP_2639	0.73	-0.4
3,023,956	+		PP_2639	0.73	+1.3
3,023,956	+		PP_2639	0.73	+1.1
3,023,957	-		PP_2639	0.74	-0.1
3,023,957	-		PP_2639	0.74	+1.2
3,024,006	-		PP_2639	0.79	+2.2
3,024,012	+		PP_2639	0.80	-0.2
3,024,293	+				+0.6
3,024,340	+				-0.2
3,024,380	-				-0.8
3,024,428	-		PP_2640	0.19	+1.1
3,024,522	+		PP_2640	0.40	-0.6
3,024,523	-		PP_2640	0.40	+0.9
3,024,523	-		PP_2640	0.40	+0.6
3,024,523	-		PP_2640	0.40	-0.4
3,024,789	+				+0.7
3,024,800	+				-0.1
3,024,800	+				+1.1
3,024,800	+				+1.7
3,024,801	-				-0.3
3,024,837	+				-1.7
3,024,837	+				-0.0
3,024,838	-				+0.3
3,024,838	-				-0.4
3,024,959	-				-0.6
3,025,023	+		PP_2641	0.10	-0.5
3,025,024	-		PP_2641	0.10	+0.2
3,025,114	+		PP_2641	0.15	+0.4
3,025,114	+		PP_2641	0.15	-0.9
3,025,115	-		PP_2641	0.15	-1.1
3,025,116	+				+1.5
3,025,117	-		PP_2641	0.16	+0.0